RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 ZNF507Q8TCN5 953 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 HPS3Q969F9 1004 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 PCED1BQ96HM7 432 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 C8orf48Q96LL4 319 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 SLITRK1Q96PX8 696 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 CGRRF1Q99675 332 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 ELOVL4Q9GZR5 314 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 FBRSL1Q9HCM7 1045 aaKnown RBP16.42■□□□□ 0.22
SKA3-204ENST00000462482 CRTAC1Q9NQ79 661 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 AGPAT3Q9NRZ7 376 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 TFIP11Q9UBB9 837 aaKnown RBP16.42■□□□□ 0.22
SKA3-204ENST00000462482 UBE4BO95155 1302 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 PTPRJQ12913 1337 aa16.42■□□□□ 0.22
SKA3-204ENST00000462482 TSC2P49815 1807 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 TACC1O75410 805 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 YEATS4O95619 227 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 HOXC13P31276 330 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 MPLP40238 635 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 RAP1GAPP47736 663 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 DGKEP52429 567 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 LIMK1P53667 647 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 PSMD6Q15008 389 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 CCDC6Q16204 474 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 WDR72Q3MJ13 1102 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 USP39Q53GS9 565 aaKnown RBP16.41■□□□□ 0.22
SKA3-204ENST00000462482 SCARA3Q6AZY7 606 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 NELFCDQ8IXH7 590 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 GLIS3Q8NEA6 775 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 ZC3H10Q96K80 434 aaKnown RBP16.41■□□□□ 0.22
SKA3-204ENST00000462482 VPS45Q9NRW7 570 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 FAM13BQ9NYF5 915 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 CGNQ9P2M7 1197 aaKnown RBP16.41■□□□□ 0.22
SKA3-204ENST00000462482 ATP8B3O60423 1300 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 DCHS1Q96JQ0 3298 aa16.41■□□□□ 0.22
SKA3-204ENST00000462482 DMXL1Q9Y485 3027 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 A8MXQ7 604 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 F8VP50 259 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 LEFTY2O00292 366 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 CLIC2O15247 247 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 PDIA4P13667 645 aaKnown RBP16.4■□□□□ 0.22
SKA3-204ENST00000462482 PTPN1P18031 435 aaKnown RBP16.4■□□□□ 0.22
SKA3-204ENST00000462482 ATICP31939 592 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 GBP1P32455 592 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 NOP14P78316 857 aaKnown RBP16.4■□□□□ 0.22
SKA3-204ENST00000462482 CYP24A1Q07973 514 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 E2F4Q16254 413 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 PLK5Q496M5 336 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 UNC13DQ70J99 1090 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 DDX42Q86XP3 938 aaKnown RBP eCLIP16.4■□□□□ 0.22
SKA3-204ENST00000462482 KIAA1958Q8N8K9 716 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 SYAP1Q96A49 352 aaPredicted RBP16.4■□□□□ 0.22
SKA3-204ENST00000462482 CHAMP1Q96JM3 812 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 C7orf25Q9BPX7 421 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 MRPL45Q9BRJ2 306 aaKnown RBP16.4■□□□□ 0.22
SKA3-204ENST00000462482 TTLL2Q9BWV7 592 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 LINC00597Q9H2U6 94 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 NXF1Q9UBU9 619 aaKnown RBP16.4■□□□□ 0.22
SKA3-204ENST00000462482 EBF1Q9UH73 591 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 FRYLO94915 3013 aa16.4■□□□□ 0.22
SKA3-204ENST00000462482 NUP210Q8TEM1 1887 aaPredicted RBP16.39■□□□□ 0.22
SKA3-204ENST00000462482 ZNF840PA6NDX5 716 aa16.39■□□□□ 0.21
SKA3-204ENST00000462482 EXOC3O60645 756 aa16.39■□□□□ 0.21
SKA3-204ENST00000462482 HSP90AA1P07900 732 aaKnown RBP16.39■□□□□ 0.21
SKA3-204ENST00000462482 SLC7A9P82251 487 aa16.39■□□□□ 0.21
SKA3-204ENST00000462482 NAIF1Q69YI7 327 aaPredicted RBP16.39■□□□□ 0.21
SKA3-204ENST00000462482 CNNM4Q6P4Q7 775 aa16.39■□□□□ 0.21
SKA3-204ENST00000462482 EPM2AIP1Q7L775 607 aaPredicted RBP16.39■□□□□ 0.21
SKA3-204ENST00000462482 PDZD8Q8NEN9 1154 aa16.39■□□□□ 0.21
SKA3-204ENST00000462482 GOLGA5Q8TBA6 731 aa16.39■□□□□ 0.21
SKA3-204ENST00000462482 POLR3BQ9NW08 1133 aaPredicted RBP16.39■□□□□ 0.21
SKA3-204ENST00000462482 CPQQ9Y646 472 aa16.39■□□□□ 0.21
SKA3-204ENST00000462482 SCN1AP35498 2009 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 TGFB1I1O43294 461 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 ALDH1A2O94788 518 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 RTN3O95197 1032 aaPredicted RBP16.38■□□□□ 0.21
SKA3-204ENST00000462482 ADH1CP00326 375 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 CST3P01034 146 aaPredicted RBP16.38■□□□□ 0.21
SKA3-204ENST00000462482 MBL2P11226 248 aaPredicted RBP16.38■□□□□ 0.21
SKA3-204ENST00000462482 YWHAQP27348 245 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 HOXD13P35453 343 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 AP3M2P53677 418 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 SEC13P55735 322 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 USP46P62068 366 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 CREB5Q02930 508 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 IFRD2Q12894 506 aaPredicted RBP16.38■□□□□ 0.21
SKA3-204ENST00000462482 TAF10Q12962 218 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 BIRC3Q13489 604 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 C2orf27AQ580R0 203 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 STPG1Q5TH74 334 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 FILIP1Q7Z7B0 1213 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 B3GALNT2Q8NCR0 500 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 TNIP3Q96KP6 325 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 MED10Q9BTT4 135 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 SMPD4Q9NXE4 827 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 TBC1D14Q9P2M4 693 aa16.38■□□□□ 0.21
SKA3-204ENST00000462482 PVALEFA0A1B0GWK0 134 aa16.37■□□□□ 0.21
SKA3-204ENST00000462482 POLR2DO15514 142 aaKnown RBP16.37■□□□□ 0.21
SKA3-204ENST00000462482 STAU1O95793 577 aaKnown RBP16.37■□□□□ 0.21
SKA3-204ENST00000462482 TRIM21P19474 475 aaKnown RBP16.37■□□□□ 0.21
SKA3-204ENST00000462482 ME1P48163 572 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms