RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 NDST1P52848 882 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 DCAF6Q58WW2 860 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 FAM111AQ96PZ2 611 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 STAP1Q9ULZ2 295 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 ATP11BQ9Y2G3 1177 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 FIS1Q9Y3D6 152 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 H3BRB1 525 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 FKTNO75072 461 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 VDRP11473 427 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 MIPP30301 263 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 MROH9Q5TGP6 573 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 RIBC1Q8N443 379 aaPredicted RBP12.14□□□□□ -0.47
NPHP4-204ENST00000460696 FAM172AQ8WUF8 416 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 TUT1Q9H6E5 874 aaKnown RBP12.14□□□□□ -0.47
NPHP4-204ENST00000460696 SMYD3Q9H7B4 428 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 PCMTD2Q9NV79 361 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 PAK5Q9P286 719 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 ZNF214Q9UL59 606 aaPredicted RBP12.14□□□□□ -0.47
NPHP4-204ENST00000460696 NAV1Q8NEY1 1877 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 NFASCO94856 1347 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 TRIM49D1C9J1S8 452 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 ATP9BO43861 1147 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 BANF1O75531 89 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 TARSP26639 723 aaKnown RBP12.14□□□□□ -0.47
NPHP4-204ENST00000460696 JADE1Q6IE81 842 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 WDR75Q8IWA0 830 aaKnown RBP12.14□□□□□ -0.47
NPHP4-204ENST00000460696 AGR3Q8TD06 166 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 PGBD4Q96DM1 585 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 GMLQ99445 158 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 PAFAH2Q99487 392 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 NCAPGQ9BPX3 1015 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 TMEM59LQ9UK28 342 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 TLK1Q9UKI8 766 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 TSPAN16Q9UKR8 245 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 C10orf71Q711Q0 1435 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 CNTNAP1P78357 1384 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 ATP5HO75947 161 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 C4BPAP04003 597 aaKnown RBP12.13□□□□□ -0.47
NPHP4-204ENST00000460696 STIP1P31948 543 aaKnown RBP12.13□□□□□ -0.47
NPHP4-204ENST00000460696 PLCB4Q15147 1175 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 CNGA2Q16280 664 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 BOLA3Q53S33 107 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 NSMCE1Q8WV22 266 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 PCDH9Q9HC56 1237 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 ABCF3Q9NUQ8 709 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 ASS1P00966 412 aaKnown RBP12.13□□□□□ -0.47
NPHP4-204ENST00000460696 NFICP08651 508 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 TYK2P29597 1187 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 PEX19P40855 299 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 RTP1P59025 263 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 COPS2P61201 443 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 SEPT6Q14141 434 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 RSPH3Q86UC2 560 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 SCUBE3Q8IX30 993 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 DEFB118Q96PH6 123 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 FIZ1Q96SL8 496 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 CNPY3Q9BT09 278 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 FAM167BQ9BTA0 163 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 TMEM134Q9H6X4 195 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 SULT1E1P49888 294 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 PEX5P50542 639 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 PRPSAP1Q14558 356 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 C15orf59Q2T9L4 293 aaPredicted RBP12.13□□□□□ -0.47
NPHP4-204ENST00000460696 ARL13BQ3SXY8 428 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 EFHC2Q5JST6 749 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 DCLK2Q8N568 766 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 APPL2Q8NEU8 664 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 LRRN4Q8WUT4 740 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 ZNF516Q92618 1163 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 TNIP3Q96KP6 325 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 SLITRK1Q96PX8 696 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 NUDCD1Q96RS6 583 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 OSMRQ99650 979 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 APOBEC3GQ9HC16 384 aaKnown RBP12.13□□□□□ -0.47
NPHP4-204ENST00000460696 SETD4Q9NVD3 440 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 BTAF1O14981 1849 aa12.13□□□□□ -0.47
NPHP4-204ENST00000460696 KBTBD13C9JR72 458 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 O00370 1275 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 DIAPH2O60879 1101 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 MAFO75444 373 aaPredicted RBP12.12□□□□□ -0.47
NPHP4-204ENST00000460696 DRD4P21917 467 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 EIF4BP23588 611 aaKnown RBP12.12□□□□□ -0.47
NPHP4-204ENST00000460696 SERPINB6P35237 376 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 GNL1P36915 607 aaPredicted RBP12.12□□□□□ -0.47
NPHP4-204ENST00000460696 CRHR2Q13324 411 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 STILQ15468 1287 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 LRRC6Q86X45 466 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 FAM131BQ86XD5 332 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 NDUFAF2Q8N183 169 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 MAGEB18Q96M61 343 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 ZNF560Q96MR9 790 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 ZIC5Q96T25 663 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 ACO2Q99798 780 aaKnown RBP12.12□□□□□ -0.47
NPHP4-204ENST00000460696 NOD2Q9HC29 1040 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 TMEM51Q9NW97 253 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 ZFATQ9P243 1243 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 HAO1Q9UJM8 370 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 A0A1B0GUL6 1792 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 MICAL2O94851 1124 aa12.12□□□□□ -0.47
NPHP4-204ENST00000460696 FARP2O94887 1054 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms