RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 DNAH14Q0VDD8 3507 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 C2orf78A6NCI8 922 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 CHURC1-FNTBB4DL54 471 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 PHACTR2O75167 634 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 CMA1P23946 247 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 IFNAR2P48551 515 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 FNTBP49356 437 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 CLDN10P78369 228 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 STK4Q13043 487 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 BIRC3Q13489 604 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 PUM1Q14671 1186 aaKnown RBP eCLIP24.28■■□□□ 1.48
PTPN4-207ENST00000460162 KMT5BQ4FZB7 885 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 ARL14EPQ8N8R7 260 aaPredicted RBP24.28■■□□□ 1.48
PTPN4-207ENST00000460162 PLEKHO2Q8TD55 490 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 PARD3BQ8TEW8 1205 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 CYP2S1Q96SQ9 504 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 DUS2Q9NX74 493 aaKnown RBP24.28■■□□□ 1.48
PTPN4-207ENST00000460162 TRPM5Q9NZQ8 1165 aa24.28■■□□□ 1.48
PTPN4-207ENST00000460162 LRRIQ3A6PVS8 624 aaPredicted RBP24.27■■□□□ 1.48
PTPN4-207ENST00000460162 A8MXQ7 604 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 F8VP50 259 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 PTPN1P18031 435 aaKnown RBP24.27■■□□□ 1.48
PTPN4-207ENST00000460162 PPP3CCP48454 512 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 CASP4P49662 377 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 USP46P62068 366 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 KRT85P78386 507 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 DMWDQ09019 674 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 ZNF699Q32M78 642 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 TDRD10Q5VZ19 366 aaKnown RBP24.27■■□□□ 1.48
PTPN4-207ENST00000460162 PRR23BQ6ZRT6 265 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 B3GALNT2Q8NCR0 500 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 SH3RF2Q8TEC5 729 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 SPATA32Q96LK8 384 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 KCTD10Q9H3F6 313 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 DPEP3Q9H4B8 488 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 ECT2Q9H8V3 914 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 C2orf42Q9NWW7 574 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 DLL3Q9NYJ7 618 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 NXF1Q9UBU9 619 aaKnown RBP24.27■■□□□ 1.48
PTPN4-207ENST00000460162 HPSEQ9Y251 543 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 MYO16Q9Y6X6 1858 aa24.27■■□□□ 1.48
PTPN4-207ENST00000460162 A0A1B0GVL5 298 aa24.26■■□□□ 1.47
PTPN4-207ENST00000460162 ATG13O75143 517 aa24.26■■□□□ 1.47
PTPN4-207ENST00000460162 HDCP19113 662 aa24.26■■□□□ 1.47
PTPN4-207ENST00000460162 DRD1P21728 446 aa24.26■■□□□ 1.47
PTPN4-207ENST00000460162 GJA4P35212 333 aa24.26■■□□□ 1.47
PTPN4-207ENST00000460162 LMNB2Q03252 620 aa24.26■■□□□ 1.47
PTPN4-207ENST00000460162 ZNF518BQ9C0D4 1074 aa24.26■■□□□ 1.47
PTPN4-207ENST00000460162 DMAC2Q9NW81 257 aa24.26■■□□□ 1.47
PTPN4-207ENST00000460162 WNT6Q9Y6F9 365 aa24.26■■□□□ 1.47
PTPN4-207ENST00000460162 PDXKO00764 312 aa24.25■■□□□ 1.47
PTPN4-207ENST00000460162 NCOA4Q13772 614 aa24.25■■□□□ 1.47
PTPN4-207ENST00000460162 SIM2Q14190 667 aaPredicted RBP24.25■■□□□ 1.47
PTPN4-207ENST00000460162 EML3Q32P44 896 aa24.25■■□□□ 1.47
PTPN4-207ENST00000460162 FBXO43Q4G163 708 aa24.25■■□□□ 1.47
PTPN4-207ENST00000460162 ZNF667Q5HYK9 610 aa24.25■■□□□ 1.47
PTPN4-207ENST00000460162 WDR5BQ86VZ2 330 aa24.25■■□□□ 1.47
PTPN4-207ENST00000460162 KIAA1958Q8N8K9 716 aa24.25■■□□□ 1.47
PTPN4-207ENST00000460162 TTC16Q8NEE8 873 aa24.25■■□□□ 1.47
PTPN4-207ENST00000460162 P2RY13Q9BPV8 354 aa24.25■■□□□ 1.47
PTPN4-207ENST00000460162 SMYD3Q9H7B4 428 aa24.25■■□□□ 1.47
PTPN4-207ENST00000460162 ATP8B3O60423 1300 aa24.25■■□□□ 1.47
PTPN4-207ENST00000460162 ZNF840PA6NDX5 716 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 HRO43593 1189 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 LRP3O75074 770 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 CLSTN1O94985 981 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 OLFM2O95897 454 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 EGFP01133 1207 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 NR3C1P04150 777 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 RETP07949 1114 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 SDHBP21912 280 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 LPAL2Q16609 132 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 HEATR6Q6AI08 1181 aaKnown RBP24.24■■□□□ 1.47
PTPN4-207ENST00000460162 PKN3Q6P5Z2 889 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 DGLUCYQ7Z3D6 616 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 SLITRK1Q96PX8 696 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 TMEM30AQ9NV96 361 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 USP18Q9UMW8 372 aa24.24■■□□□ 1.47
PTPN4-207ENST00000460162 CCDC163A0A0D9SF12 145 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 FAM237AA0A1B0GTK4 181 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 PRR5-ARHGAP8B1AHC4 643 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 RNF40O75150 1001 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 KIF20AO95235 890 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 NFATC1O95644 943 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 C4BPAP04003 597 aaKnown RBP24.23■■□□□ 1.47
PTPN4-207ENST00000460162 TGM1P22735 817 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 SYKP43405 635 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 CACNA2D1P54289 1103 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 SLC7A9P82251 487 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 ARHGAP8P85298 464 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 NR1H3Q13133 447 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 ARHGAP30Q7Z6I6 1101 aaPredicted RBP24.23■■□□□ 1.47
PTPN4-207ENST00000460162 CD101Q93033 1021 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 TNIP3Q96KP6 325 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 B3GNT5Q9BYG0 378 aa24.23■■□□□ 1.47
PTPN4-207ENST00000460162 OAS1P00973 400 aaKnown RBP24.22■■□□□ 1.47
PTPN4-207ENST00000460162 RPN1P04843 607 aaKnown RBP24.22■■□□□ 1.47
PTPN4-207ENST00000460162 P4HA1P13674 534 aa24.22■■□□□ 1.47
PTPN4-207ENST00000460162 GALK1P51570 392 aa24.22■■□□□ 1.47
PTPN4-207ENST00000460162 SRSF5Q13243 272 aaKnown RBP24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms