RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 SLITRK3O94933 977 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 FBXO21O94952 628 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 STARD3NLO95772 234 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 OLFM2O95897 454 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 PCNAP12004 261 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 ZNF20P17024 532 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 MAPK3P27361 379 aaPredicted RBP5.79□□□□□ -1.48
VPS41-209ENST00000457055 CSTF2P33240 577 aaKnown RBP eCLIP5.79□□□□□ -1.48
VPS41-209ENST00000457055 CYP2C19P33261 490 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 STAT5AP42229 794 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 VPS41P49754 854 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 RIPK4P57078 832 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 ZXDAP98168 799 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 PPIDQ08752 370 aaKnown RBP5.79□□□□□ -1.48
VPS41-209ENST00000457055 SGCGQ13326 291 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 NCAPHQ15003 741 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 WDR43Q15061 677 aaKnown RBP eCLIP5.79□□□□□ -1.48
VPS41-209ENST00000457055 EZH2Q15910 746 aaKnown RBP5.79□□□□□ -1.48
VPS41-209ENST00000457055 CCDC14Q49A88 953 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 CCDC40Q4G0X9 1142 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 SYDE2Q5VT97 1194 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 TPGS2Q68CL5 300 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 CNNM4Q6P4Q7 775 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 KLC3Q6P597 504 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 SHQ1Q6PI26 577 aaKnown RBP5.79□□□□□ -1.48
VPS41-209ENST00000457055 OLFM4Q6UX06 510 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 RGS9BPQ6ZS82 235 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 LHFPL2Q6ZUX7 228 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 MICALCLQ6ZW33 695 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 KRT74Q7RTS7 529 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 RAB11FIP4Q86YS3 637 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 RIOX2Q8IUF8 465 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 NOSTRINQ8IVI9 506 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 CCDC33Q8N5R6 958 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 SPC24Q8NBT2 197 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 OR52K1Q8NGK4 314 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 PLBD2Q8NHP8 589 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 RFWD2Q8NHY2 731 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 SLC30A5Q8TAD4 765 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 ARL5BQ96KC2 179 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 SGCZQ96LD1 299 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 LRGUKQ96M69 825 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 GAL3ST1Q99999 423 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 TREX2Q9BQ50 279 aaPredicted RBP5.79□□□□□ -1.48
VPS41-209ENST00000457055 SLF1Q9BQI6 1058 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 NTPCRQ9BSD7 190 aaKnown RBP5.79□□□□□ -1.48
VPS41-209ENST00000457055 THUMPD2Q9BTF0 503 aaKnown RBP5.79□□□□□ -1.48
VPS41-209ENST00000457055 TARS2Q9BW92 718 aaKnown RBP5.79□□□□□ -1.48
VPS41-209ENST00000457055 APOL5Q9BWW9 433 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 TXLNGYQ9BZA5 131 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 NACAP1Q9BZK3 213 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 NT5C3AQ9H0P0 336 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 ACAD9Q9H845 621 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 LIN28AQ9H9Z2 209 aaKnown RBP5.79□□□□□ -1.48
VPS41-209ENST00000457055 ARFGAP3Q9NP61 516 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 PLSCR4Q9NRQ2 329 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 HOMER3Q9NSC5 361 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 C1orf112Q9NSG2 853 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 OGFRQ9NZT2 677 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.79□□□□□ -1.48
VPS41-209ENST00000457055 ATPIF1Q9UII2 106 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 TIMM13Q9Y5L4 95 aaPredicted RBP5.79□□□□□ -1.48
VPS41-209ENST00000457055 CLIP1P30622 1438 aa5.79□□□□□ -1.48
VPS41-209ENST00000457055 A0A0B4J269 797 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 LRRC14BA6NHZ5 514 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 DDX3XO00571 662 aaKnown RBP eCLIP5.78□□□□□ -1.48
VPS41-209ENST00000457055 KCNJ13O60928 360 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 ZNF189O75820 626 aaPredicted RBP5.78□□□□□ -1.48
VPS41-209ENST00000457055 TBX18O95935 607 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 PDGFRAP16234 1089 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 GAP43P17677 238 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 CCND1P24385 295 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 DRG2P55039 364 aaKnown RBP5.78□□□□□ -1.48
VPS41-209ENST00000457055 NLRP5P59047 1200 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 BTKQ06187 659 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 CYP4F3Q08477 520 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 CUL4BQ13620 913 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 GTF2H3Q13889 308 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 KCNB1Q14721 858 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 NAA25Q14CX7 972 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 SMUG1Q53HV7 270 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 PRR31Q5SQ13 230 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 ZBTB41Q5SVQ8 909 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 C8orf74Q6P047 294 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 EPM2AIP1Q7L775 607 aaPredicted RBP5.78□□□□□ -1.48
VPS41-209ENST00000457055 BNIPLQ7Z465 357 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 SPATA21Q7Z572 469 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 HOOK3Q86VS8 718 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 TRMT2AQ8IZ69 625 aaKnown RBP5.78□□□□□ -1.48
VPS41-209ENST00000457055 CNTD1Q8N815 330 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 ZBTB8BQ8NAP8 495 aaPredicted RBP5.78□□□□□ -1.48
VPS41-209ENST00000457055 TXNDC5Q8NBS9 432 aaKnown RBP5.78□□□□□ -1.48
VPS41-209ENST00000457055 DENND6BQ8NEG7 585 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 CHST13Q8NET6 341 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 TOR1AIP2Q8NFQ8 470 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 DEPTORQ8TB45 409 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.78□□□□□ -1.48
VPS41-209ENST00000457055 LEO1Q8WVC0 666 aaPredicted RBP5.78□□□□□ -1.48
VPS41-209ENST00000457055 UCMAQ8WVF2 138 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 BTN2A2Q8WVV5 523 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms