RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	ABCB6	Q9NP58	842 aa		9.27	□□□□□ -0.93
RFX3-209	ENST00000451859	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	9.27	□□□□□ -0.93
RFX3-209	ENST00000451859	MAGEC2	Q9UBF1	373 aa	Predicted RBP	9.27	□□□□□ -0.93
RFX3-209	ENST00000451859	USP25	Q9UHP3	1055 aa		9.27	□□□□□ -0.93
RFX3-209	ENST00000451859	CDH9	Q9ULB4	789 aa		9.27	□□□□□ -0.93
RFX3-209	ENST00000451859	HPSE	Q9Y251	543 aa		9.27	□□□□□ -0.93
RFX3-209	ENST00000451859	CCL26	Q9Y258	94 aa		9.27	□□□□□ -0.93
RFX3-209	ENST00000451859	NME7	Q9Y5B8	376 aa		9.27	□□□□□ -0.93
RFX3-209	ENST00000451859	LRRIQ3	A6PVS8	624 aa	Predicted RBP	9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	SPECC1L-ADORA2A	F8WAN1	911 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	ARNTL	O00327	626 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	TADA3	O75528	432 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	NOL4	O94818	638 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	ADH1B	P00325	375 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	ABL1	P00519	1130 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	F11	P03951	625 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	NR3C1	P04150	777 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	CKM	P06732	381 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	ANXA13	P27216	316 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	GNL1	P36915	607 aa	Predicted RBP	9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	GRIK1	P39086	918 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	DLG4	P78352	724 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	FCHO2	Q0JRZ9	810 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	PSMD2	Q13200	908 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	NCOA4	Q13772	614 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	PON2	Q15165	354 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	ARHGAP29	Q52LW3	1261 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	TDRD10	Q5VZ19	366 aa	Known RBP	9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	TRIM68	Q6AZZ1	485 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	ZC3H14	Q6PJT7	736 aa	Known RBP	9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	TXNDC11	Q6PKC3	985 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	KRBA2	Q6ZNG9	492 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	DPH6	Q7L8W6	267 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	MAML2	Q8IZL2	1156 aa	Predicted RBP	9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	ADSSL1	Q8N142	457 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	CELF5	Q8N6W0	485 aa	Known RBP	9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	GOLGA5	Q8TBA6	731 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	SPATA18	Q8TC71	538 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	USP13	Q92995	863 aa	Predicted RBP	9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	SYAP1	Q96A49	352 aa	Predicted RBP	9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	PCED1B	Q96HM7	432 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	SLC22A12	Q96S37	553 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	NELL2	Q99435	816 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	OSBPL6	Q9BZF3	934 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	SCAND2P	Q9GZW5	306 aa	Predicted RBP	9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	SMYD3	Q9H7B4	428 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	MMRN2	Q9H8L6	949 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	LMAN1L	Q9HAT1	526 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	RBM12	Q9NTZ6	932 aa	Known RBP	9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	CGN	Q9P2M7	1197 aa	Known RBP	9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	ATP6V1D	Q9Y5K8	247 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	ZNF292	O60281	2723 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	OTOGL	Q3ZCN5	2332 aa		9.26	□□□□□ -0.93
RFX3-209	ENST00000451859	GVINP1	Q7Z2Y8	2422 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859		A8MXQ7	604 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	CLDN5	O00501	218 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	WFS1	O76024	890 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	CTH	P32929	405 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	PIK3CA	P42336	1068 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	MAGEA9	P43362	315 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	CDH8	P55286	799 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	USP46	P62068	366 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	DPYD	Q12882	1025 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	ORC1	Q13415	861 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	FZD5	Q13467	585 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	BECN1	Q14457	450 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	MAPRE1	Q15691	268 aa	Known RBP	9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	CFAP221	Q4G0U5	840 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	ZNF667	Q5HYK9	610 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	FAM171B	Q6P995	826 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	RIN3	Q8TB24	985 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	PARD3B	Q8TEW8	1205 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	CLDN23	Q96B33	292 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	FUBP3	Q96I24	572 aa	Known RBP eCLIP	9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	CYP2S1	Q96SQ9	504 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	MED10	Q9BTT4	135 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	ZNF518B	Q9C0D4	1074 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	XYLT2	Q9H1B5	865 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	KCTD10	Q9H3F6	313 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	EBF3	Q9H4W6	596 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	TRPV5	Q9NQA5	729 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	GKN1	Q9NS71	199 aa		9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	THG1L	Q9NWX6	298 aa	Known RBP	9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	UXT	Q9UBK9	157 aa	Predicted RBP	9.25	□□□□□ -0.93
RFX3-209	ENST00000451859	TRAV19	A0A0A6YYK7	116 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859		A0A1W2PQ27	194 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859		A0A1W2PQ64	194 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859		A0A1W2PQD8	194 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	C2orf78	A6NCI8	922 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859		F8VP50	259 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	PDXK	O00764	312 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	SCAMP3	O14828	347 aa	Known RBP	9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	CALU	O43852	315 aa	Predicted RBP	9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	KIN	O60870	393 aa	Known RBP	9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	ZNF202	O95125	648 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	VNN1	O95497	513 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	AVP	P01185	164 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	LMNA	P02545	664 aa	Known RBP	9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	MYL1	P05976	194 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	TRIM49	P0CI25	452 aa		9.24	□□□□□ -0.93

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms