RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 C8orf48Q96LL4 319 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 CEP295NLQ96MC4 621 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 IER2Q9BTL4 223 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 TTLL2Q9BWV7 592 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 ATP6V1DQ9Y5K8 247 aa22.12■■□□□ 1.13
SDC1-205ENST00000447124 TRAV19A0A0A6YYK7 116 aa22.11■■□□□ 1.13
SDC1-205ENST00000447124 USP17L7P0C7H9 530 aa22.11■■□□□ 1.13
SDC1-205ENST00000447124 HDCP19113 662 aa22.11■■□□□ 1.13
SDC1-205ENST00000447124 CXCL12P48061 93 aa22.11■■□□□ 1.13
SDC1-205ENST00000447124 ZXDBP98169 803 aa22.11■■□□□ 1.13
SDC1-205ENST00000447124 CCINQ13939 588 aa22.11■■□□□ 1.13
SDC1-205ENST00000447124 LRRC32Q14392 662 aa22.11■■□□□ 1.13
SDC1-205ENST00000447124 ZNF77Q15935 545 aa22.11■■□□□ 1.13
SDC1-205ENST00000447124 ZNF699Q32M78 642 aa22.11■■□□□ 1.13
SDC1-205ENST00000447124 ZNF667Q5HYK9 610 aa22.11■■□□□ 1.13
SDC1-205ENST00000447124 PAQR9Q6ZVX9 377 aa22.11■■□□□ 1.13
SDC1-205ENST00000447124 B3GALNT2Q8NCR0 500 aa22.11■■□□□ 1.13
SDC1-205ENST00000447124 FBRSL1Q9HCM7 1045 aaKnown RBP22.11■■□□□ 1.13
SDC1-205ENST00000447124 PTPRDP23468 1912 aa22.1■■□□□ 1.13
SDC1-205ENST00000447124 ANAPC1Q9H1A4 1944 aa22.1■■□□□ 1.13
SDC1-205ENST00000447124 TRIM66O15016 1216 aa22.1■■□□□ 1.13
SDC1-205ENST00000447124 CALUO43852 315 aaPredicted RBP22.1■■□□□ 1.13
SDC1-205ENST00000447124 ANXA13P27216 316 aa22.1■■□□□ 1.13
SDC1-205ENST00000447124 CCR3P51677 355 aa22.1■■□□□ 1.13
SDC1-205ENST00000447124 DMWDQ09019 674 aa22.1■■□□□ 1.13
SDC1-205ENST00000447124 MTF1Q14872 753 aa22.1■■□□□ 1.13
SDC1-205ENST00000447124 FAM126AQ9BYI3 521 aaPredicted RBP22.1■■□□□ 1.13
SDC1-205ENST00000447124 LINC00597Q9H2U6 94 aa22.1■■□□□ 1.13
SDC1-205ENST00000447124 KIF26AQ9ULI4 1882 aaPredicted RBP22.1■■□□□ 1.13
SDC1-205ENST00000447124 FRYLO94915 3013 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 ZNF840PA6NDX5 716 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 IKBKBO14920 756 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 AKAP3O75969 853 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 CKMP06732 381 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 NOP14P78316 857 aaKnown RBP22.09■■□□□ 1.13
SDC1-205ENST00000447124 USP4Q13107 963 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 KCNB1Q14721 858 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 NFIL3Q16649 462 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 SGSM1Q2NKQ1 1148 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 NAIF1Q69YI7 327 aaPredicted RBP22.09■■□□□ 1.13
SDC1-205ENST00000447124 SPOPLQ6IQ16 392 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 FSTL4Q6MZW2 842 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 CC2D1AQ6P1N0 951 aaPredicted RBP22.09■■□□□ 1.13
SDC1-205ENST00000447124 SCARA5Q6ZMJ2 495 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 SH3RF2Q8TEC5 729 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 RUBCNQ92622 972 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 KCNK16Q96T55 309 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 RNF38Q9H0F5 515 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 TRPM5Q9NZQ8 1165 aa22.09■■□□□ 1.13
SDC1-205ENST00000447124 K7ESF4 209 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 TRDMT1O14717 391 aaKnown RBP22.08■■□□□ 1.13
SDC1-205ENST00000447124 GALK1P51570 392 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 VAMP7P51809 220 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 TAF10Q12962 218 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 PDGFRLQ15198 375 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 TMEM196Q5HYL7 178 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 PKN3Q6P5Z2 889 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 GUF1Q8N442 669 aaKnown RBP22.08■■□□□ 1.13
SDC1-205ENST00000447124 TTC16Q8NEE8 873 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 OSCP1Q8WVF1 389 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 CCDC47Q96A33 483 aaKnown RBP22.08■■□□□ 1.13
SDC1-205ENST00000447124 ELOVL4Q9GZR5 314 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 EPC1Q9H2F5 836 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 ECT2Q9H8V3 914 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 DUS2Q9NX74 493 aaKnown RBP22.08■■□□□ 1.13
SDC1-205ENST00000447124 ARHGAP26Q9UNA1 814 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 FRMD4BQ9Y2L6 1034 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 WNT6Q9Y6F9 365 aa22.08■■□□□ 1.13
SDC1-205ENST00000447124 ATG2BQ96BY7 2078 aa22.08■■□□□ 1.12
SDC1-205ENST00000447124 MAPK13O15264 365 aa22.07■■□□□ 1.12
SDC1-205ENST00000447124 HLA-DRAP01903 254 aa22.07■■□□□ 1.12
SDC1-205ENST00000447124 TCF3P15923 654 aa22.07■■□□□ 1.12
SDC1-205ENST00000447124 NR2F2P24468 414 aa22.07■■□□□ 1.12
SDC1-205ENST00000447124 GJA4P35212 333 aa22.07■■□□□ 1.12
SDC1-205ENST00000447124 PPP3CAQ08209 521 aa22.07■■□□□ 1.12
SDC1-205ENST00000447124 ACOT1Q86TX2 421 aa22.07■■□□□ 1.12
SDC1-205ENST00000447124 KIAA2013Q8IYS2 634 aa22.07■■□□□ 1.12
SDC1-205ENST00000447124 SYNPOQ8N3V7 929 aa22.07■■□□□ 1.12
SDC1-205ENST00000447124 KIF20AO95235 890 aa22.06■■□□□ 1.12
SDC1-205ENST00000447124 PAPSS2O95340 614 aaPredicted RBP22.06■■□□□ 1.12
SDC1-205ENST00000447124 ASS1P00966 412 aaKnown RBP22.06■■□□□ 1.12
SDC1-205ENST00000447124 TRIM49P0CI25 452 aa22.06■■□□□ 1.12
SDC1-205ENST00000447124 TRIM49CP0CI26 452 aa22.06■■□□□ 1.12
SDC1-205ENST00000447124 NRLP54845 237 aa22.06■■□□□ 1.12
SDC1-205ENST00000447124 MCCD1P59942 119 aaPredicted RBP22.06■■□□□ 1.12
SDC1-205ENST00000447124 ORC1Q13415 861 aa22.06■■□□□ 1.12
SDC1-205ENST00000447124 EML3Q32P44 896 aa22.06■■□□□ 1.12
SDC1-205ENST00000447124 ZCWPW2Q504Y3 356 aa22.06■■□□□ 1.12
SDC1-205ENST00000447124 SMYD4Q8IYR2 804 aaPredicted RBP22.06■■□□□ 1.12
SDC1-205ENST00000447124 NUP93Q8N1F7 819 aa22.06■■□□□ 1.12
SDC1-205ENST00000447124 CRYBG2Q8N1P7 616 aa22.06■■□□□ 1.12
SDC1-205ENST00000447124 APOBEC3GQ9HC16 384 aaKnown RBP22.06■■□□□ 1.12
SDC1-205ENST00000447124 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.06■■□□□ 1.12
SDC1-205ENST00000447124 HMGXB4Q9UGU5 601 aa22.06■■□□□ 1.12
SDC1-205ENST00000447124 CHURC1-FNTBB4DL54 471 aa22.05■■□□□ 1.12
SDC1-205ENST00000447124 LEFTY2O00292 366 aa22.05■■□□□ 1.12
SDC1-205ENST00000447124 TNFRSF10BO14763 440 aa22.05■■□□□ 1.12
SDC1-205ENST00000447124 HRO43593 1189 aa22.05■■□□□ 1.12
SDC1-205ENST00000447124 OLFM2O95897 454 aa22.05■■□□□ 1.12
SDC1-205ENST00000447124 EGFP01133 1207 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms