RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 TJP2Q9UDY2 1190 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 ZNF536O15090 1300 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 PTPRJQ12913 1337 aa12.4□□□□□ -0.42
MSH6-204ENST00000445503 KLRG2A4D1S0 409 aaPredicted RBP12.4□□□□□ -0.43
MSH6-204ENST00000445503 GRIN3BO60391 1043 aa12.4□□□□□ -0.43
MSH6-204ENST00000445503 VNN1O95497 513 aa12.4□□□□□ -0.43
MSH6-204ENST00000445503 OSBPP22059 807 aa12.4□□□□□ -0.43
MSH6-204ENST00000445503 ABCD1P33897 745 aa12.4□□□□□ -0.43
MSH6-204ENST00000445503 VPS11Q9H270 941 aa12.4□□□□□ -0.43
MSH6-204ENST00000445503 FAM49BQ9NUQ9 324 aa12.4□□□□□ -0.43
MSH6-204ENST00000445503 ABHD2P08910 425 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 KCNA3P22001 575 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 VHLP40337 213 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 TAF5Q15542 800 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 RFWD3Q6PCD5 774 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 ANKS1BQ7Z6G8 1248 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 SULF1Q8IWU6 871 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 TRIM42Q8IWZ5 723 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 CEP120Q8N960 986 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 ZNF280CQ8ND82 737 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 RDM1Q8NG50 284 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 SLC26A7Q8TE54 656 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 TRAPPC12Q8WVT3 735 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 E2F7Q96AV8 911 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 ITGB3P05106 788 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 MIPP30301 263 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 FKBP1AP62942 108 aaKnown RBP12.39□□□□□ -0.43
MSH6-204ENST00000445503 RGS9BPQ6ZS82 235 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 RSPH3Q86UC2 560 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 SLCO2A1Q92959 643 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 L3MBTL3Q96JM7 780 aaPredicted RBP12.39□□□□□ -0.43
MSH6-204ENST00000445503 EBF2Q9HAK2 575 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 ANGPTL2Q9UKU9 493 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 USP18Q9UMW8 372 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 MAFGO15525 162 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 GJB1P08034 283 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 SNRPAP09012 282 aaKnown RBP12.39□□□□□ -0.43
MSH6-204ENST00000445503 SERPINB4P48594 390 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 AQP5P55064 265 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 NXNQ6DKJ4 435 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 CLNKQ7Z7G1 428 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 TEX9Q8N6V9 391 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 BTBD10Q9BSF8 475 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 LRMDAQ9H2I8 198 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 ZNF541Q9H0D2 1346 aa12.39□□□□□ -0.43
MSH6-204ENST00000445503 TCRBV7S3A2A0A539 114 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 CXCL8P10145 99 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 KDELR1P24390 212 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 SLC45A4Q5BKX6 768 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 RNASEH2BQ5TBB1 312 aaKnown RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 WDR75Q8IWA0 830 aaKnown RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 SPDYE1Q8NFV5 336 aaPredicted RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 TEKT4Q8WW24 435 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 TSNARE1Q96NA8 513 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 DLEC1Q9Y238 1755 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 SMCHD1A6NHR9 2005 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 BHMG1C9JSJ3 638 aaPredicted RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 MYCNP04198 464 aaPredicted RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 SDC4P31431 198 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 TCF7P36402 384 aaPredicted RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 RFC5P40937 340 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 OGDHQ02218 1023 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 C15orf59Q2T9L4 293 aaPredicted RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 GRAMD1BQ3KR37 738 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 C7orf43Q8WVR3 580 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 TFAP2BQ92481 460 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 CPT1BQ92523 772 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 MTBPQ96DY7 904 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 MPHOSPH6Q99547 160 aaKnown RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 SMYD2Q9NRG4 433 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 NDE1Q9NXR1 346 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 OGTO15294 1046 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 CFLARO15519 480 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 KLRC2P26717 231 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 CCNHP51946 323 aaPredicted RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 STX3Q13277 289 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 DPYSL3Q14195 570 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 SURF1Q15526 300 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 GALNTL6Q49A17 601 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 KHDC1Q4VXA5 237 aaKnown RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 CGB2Q6NT52 195 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 TTC7BQ86TV6 843 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 ALYREFQ86V81 257 aaKnown RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 SCG3Q8WXD2 468 aaKnown RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 INPP5DQ92835 1189 aa12.38□□□□□ -0.43
MSH6-204ENST00000445503 SRPK1Q96SB4 655 aaKnown RBP12.38□□□□□ -0.43
MSH6-204ENST00000445503 CCDC78A2IDD5 438 aa12.37□□□□□ -0.43
MSH6-204ENST00000445503 CLCN3P51790 818 aa12.37□□□□□ -0.43
MSH6-204ENST00000445503 NBPF20Q3BBV1 942 aa12.37□□□□□ -0.43
MSH6-204ENST00000445503 MSS51Q4VC12 460 aa12.37□□□□□ -0.43
MSH6-204ENST00000445503 DSTYKQ6XUX3 929 aa12.37□□□□□ -0.43
MSH6-204ENST00000445503 MICALL2Q8IY33 904 aa12.37□□□□□ -0.43
MSH6-204ENST00000445503 OR6B3Q8NGW1 331 aa12.37□□□□□ -0.43
MSH6-204ENST00000445503 RXFP2Q8WXD0 754 aa12.37□□□□□ -0.43
MSH6-204ENST00000445503 CDKL2Q92772 493 aa12.37□□□□□ -0.43
MSH6-204ENST00000445503 WWP1Q9H0M0 922 aa12.37□□□□□ -0.43
MSH6-204ENST00000445503 RSAD1Q9HA92 442 aa12.37□□□□□ -0.43
MSH6-204ENST00000445503 SYNPO2Q9UMS6 1093 aa12.37□□□□□ -0.43
MSH6-204ENST00000445503 TNRC6CQ9HCJ0 1690 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms