RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 SMC3Q9UQE7 1217 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 RPTORQ8N122 1335 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 MBD3L4A6NDZ8 208 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 MBD3L3A6NE82 208 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 H3BM21 787 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ZSCAN9O15535 394 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ZBTB14O43829 449 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 EXOC3O60645 756 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 LY86O95711 162 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 MLYCDO95822 493 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 A1BGP04217 495 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 CNPP09543 421 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 MYBL1P10243 752 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 DDCP20711 480 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 KLRK1P26718 216 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PRDX5P30044 214 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 GP5P40197 560 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 LIMK1P53667 647 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 GOLGA8FQ08AF8 430 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ADAM9Q13443 819 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 CAMK1Q14012 370 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 AOC3Q16853 763 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF569Q5MCW4 686 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 CCDC186Q7Z3E2 898 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TRIM46Q7Z4K8 759 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 POGLUT1Q8NBL1 392 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PIWIL2Q8TC59 973 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 FBLIM1Q8WUP2 373 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 VPS39Q96JC1 886 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 HTATIP2Q9BUP3 242 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TEX12Q9BXU0 123 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 RNPEPQ9H4A4 650 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 COMMD8Q9NX08 183 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 AATFQ9NY61 560 aaKnown RBP eCLIP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 DUSP13Q9UII6 198 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TMPRSS11EQ9UL52 423 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TRAV34A0A0B4J273 112 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PNMA6EA0A0J9YXQ4 647 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TMEM232C9JQI7 657 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 UBE2CO00762 179 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 UNC5CO95185 931 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 GRPP07492 148 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 SNRNP70P08621 437 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 NR2F1P10589 423 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TXNP10599 105 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 BCRP11274 1271 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 GABRB3P28472 473 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 DEKP35659 375 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 CD86P42081 329 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 SSR1P43307 286 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 RAC1P63000 192 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 POU6F2P78424 691 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PPP3CAQ08209 521 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 KLHL30Q0D2K2 578 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TMED1Q13445 227 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 KYNUQ16719 465 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 AMOTQ4VCS5 1084 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 RAP1GAP2Q684P5 730 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 MRNIPQ6NTE8 343 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 SV2AQ7L0J3 742 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 NUP54Q7Z3B4 507 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 DNAAF5Q86Y56 855 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TUSC5Q8IXB3 177 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PEX5LQ8IYB4 626 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 FBXO18Q8NFZ0 1043 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 NFKBIDQ8NI38 313 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 FNIP1Q8TF40 1166 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 DDX17Q92841 729 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 KTI12Q96EK9 354 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 SAAL1Q96ER3 474 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF764Q96H86 408 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TMEM237Q96Q45 408 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 EIF3CQ99613 913 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 FOXB1Q99853 325 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 CDIP1Q9H305 208 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PCDHB16Q9NRJ7 776 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 LANCL2Q9NS86 450 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 KCTD5Q9NXV2 234 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF624Q9P2J8 865 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TBC1D14Q9P2M4 693 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 CTNNA3Q9UI47 895 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 DAPP1Q9UN19 280 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PASKQ96RG2 1323 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 UNC79Q9P2D8 2635 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 hCG_1809904A0A1W2PP81 198 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 A0A1W2PPE2 198 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 A0A1W2PR64 198 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 VWA3AA6NCI4 1184 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 J3KTA2 159 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PRPF4O43172 522 aaKnown RBP eCLIP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ZBTB43O43298 467 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 SYNCRIPO60506 623 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 RASAL1O95294 804 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 CCDC175P0C221 793 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 TMIGD3P0DMS9 266 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PFKLP17858 780 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 ACVR2AP27037 513 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 MAP2K3P46734 347 aa2.5□□□□□ -2.01
CCDC88A-208ENST00000444458 PPP5CP53041 499 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms