RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 ZFP42Q96MM3 310 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 SLITRK1Q96PX8 696 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 FERMT1Q9BQL6 677 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 TRIM7Q9C029 511 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 ZWILCHQ9H900 591 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 RGS18Q9NS28 235 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 RRN3Q9NYV6 651 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 SPDYE4A6NLX3 237 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 DCDC2CA8MYV0 355 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 GOLGA8KD6RF30 607 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 ZFXP17010 805 aaPredicted RBP6.32□□□□□ -1.4
VPS50-205ENST00000441602 PTPN9P43378 593 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 CARSP49589 748 aaKnown RBP6.32□□□□□ -1.4
VPS50-205ENST00000441602 GABPB1Q06547 395 aaPredicted RBP6.32□□□□□ -1.4
VPS50-205ENST00000441602 SOX4Q06945 474 aaPredicted RBP6.32□□□□□ -1.4
VPS50-205ENST00000441602 NOMO2Q5JPE7 1267 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 C4orf50Q6ZRC1 276 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 SLC26A9Q7LBE3 791 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 ARCQ7LC44 396 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 LIMS2Q7Z4I7 341 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 DCP1BQ8IZD4 617 aaKnown RBP6.32□□□□□ -1.4
VPS50-205ENST00000441602 JOSD2Q8TAC2 188 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 SLC2A14Q8TDB8 520 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 HDAC7Q8WUI4 952 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 TEKT4Q8WW24 435 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 LPPQ93052 612 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 FMO2Q99518 471 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 DUSP16Q9BY84 665 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 MRPL9Q9BYD2 267 aaKnown RBP6.32□□□□□ -1.4
VPS50-205ENST00000441602 TRIM31Q9BZY9 425 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 ELAC1Q9H777 363 aaKnown RBP6.32□□□□□ -1.4
VPS50-205ENST00000441602 GOLGA2P5Q9HBQ8 144 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 NGRNQ9NPE2 291 aaKnown RBP6.32□□□□□ -1.4
VPS50-205ENST00000441602 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.32□□□□□ -1.4
VPS50-205ENST00000441602 GRIN2DO15399 1336 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 F8VP50 259 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 DAPK3O43293 454 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 B3GAT3O94766 335 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 GJB6O95452 261 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 NPR3P17342 541 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 ITIH2P19823 946 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 ACTN2P35609 894 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 PLA2G4AP47712 749 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 PLCB3Q01970 1234 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 ELAVL2Q12926 359 aaKnown RBP6.32□□□□□ -1.4
VPS50-205ENST00000441602 MDH1BQ5I0G3 518 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 SCARA3Q6AZY7 606 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 LLGL2Q6P1M3 1020 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 SCYL2Q6P3W7 929 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 LRIG3Q6UXM1 1119 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 SLC35F5Q8WV83 523 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 KBTBD7Q8WVZ9 684 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 KCTD13Q8WZ19 329 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 WNT8BQ93098 351 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 FAM149B1Q96BN6 582 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 HAUS1Q96CS2 278 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 COLEC11Q9BWP8 271 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 UBXN6Q9BZV1 441 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 TRPV6Q9H1D0 765 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 TMEM161AQ9NX61 479 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 WHRNQ9P202 907 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 HPCAL4Q9UM19 191 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 PCDHB8Q9UN66 801 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 ZNF148Q9UQR1 794 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 PCDHB7Q9Y5E2 793 aa6.32□□□□□ -1.4
VPS50-205ENST00000441602 CASTOR2A6NHX0 329 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 C2CD4BA6NLJ0 364 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 MCF2LO15068 1137 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 SPTLC1O15269 473 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 INPPL1O15357 1258 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 DAB1O75553 588 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 TRUB2O95900 331 aaKnown RBP6.31□□□□□ -1.4
VPS50-205ENST00000441602 LCP1P13796 627 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 CCDC130P13994 396 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 CAPN2P17655 700 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 OAS2P29728 719 aaKnown RBP6.31□□□□□ -1.4
VPS50-205ENST00000441602 HSPA9P38646 679 aaKnown RBP6.31□□□□□ -1.4
VPS50-205ENST00000441602 MRPS25P82663 173 aaKnown RBP6.31□□□□□ -1.4
VPS50-205ENST00000441602 KRT17Q04695 432 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 PTK6Q13882 451 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 PKDCCQ504Y2 493 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 KAZNQ674X7 775 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 LHX8Q68G74 356 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 DUPD1Q68J44 220 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 DRICH1Q6PGQ1 229 aaPredicted RBP6.31□□□□□ -1.4
VPS50-205ENST00000441602 OSTM1Q86WC4 334 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 TTC30AQ86WT1 665 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 VSIG1Q86XK7 387 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 ZNF784Q8NCA9 323 aaPredicted RBP6.31□□□□□ -1.4
VPS50-205ENST00000441602 C1orf54Q8WWF1 131 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 SMARCD1Q96GM5 515 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 SNF8Q96H20 258 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 TRIM51Q9BSJ1 452 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 HEMGNQ9BXL5 484 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 USP18Q9UMW8 372 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 DRG1Q9Y295 367 aaKnown RBP6.31□□□□□ -1.4
VPS50-205ENST00000441602 SNX24Q9Y343 169 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 hCG_1818297A0A087WSY0 165 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 ESYT3A0FGR9 886 aa6.31□□□□□ -1.4
VPS50-205ENST00000441602 CFAP69A5D8W1 941 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms