RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 STK38Q15208 465 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 SURF1Q15526 300 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 MAPRE1Q15691 268 aaKnown RBP8.32□□□□□ -1.08
VPS50-204ENST00000438395 INTS6LQ5JSJ4 861 aaKnown RBP8.32□□□□□ -1.08
VPS50-204ENST00000438395 IL31Q6EBC2 164 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 MRPL14Q6P1L8 145 aaKnown RBP8.32□□□□□ -1.08
VPS50-204ENST00000438395 TXNDC11Q6PKC3 985 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 USP49Q70CQ1 688 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 MON1AQ86VX9 555 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 GPD1LQ8N335 351 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 PDILTQ8N807 584 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 C1orf127Q8N9H9 656 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 C12orf50Q8NA57 414 aaPredicted RBP8.32□□□□□ -1.08
VPS50-204ENST00000438395 CCDC26Q8TAB7 109 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 SPATA18Q8TC71 538 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 LEO1Q8WVC0 666 aaPredicted RBP8.32□□□□□ -1.08
VPS50-204ENST00000438395 ATP2A3Q93084 1043 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 ACBD6Q9BR61 282 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 MKNK1Q9BUB5 465 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 SLC46A2Q9BY10 475 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 MTMR12Q9C0I1 747 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 EBF3Q9H4W6 596 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 PDE11AQ9HCR9 933 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 EHD2Q9NZN4 543 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 L1RE1Q9UN81 338 aa8.32□□□□□ -1.08
VPS50-204ENST00000438395 CNOT1A5YKK6 2376 aaKnown RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 DCDC2BA2VCK2 349 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 ZNF233A6NK53 670 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 RPP40O75818 363 aaKnown RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 HSP90AA1P07900 732 aaKnown RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 USP17L7P0C7H9 530 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 SYT1P21579 422 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 ACAT1P24752 427 aaKnown RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 HOXA6P31267 233 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 GPR15P49685 360 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 ATXN1P54253 815 aaKnown RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 ASIC1P78348 528 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 KCNA1Q09470 495 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 RESTQ13127 1097 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 SRSF5Q13243 272 aaKnown RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 CUL4AQ13619 759 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 CCINQ13939 588 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 ZNF268Q14587 947 aaPredicted RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 MTF1Q14872 753 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 ELF2Q15723 593 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 CSRP2Q16527 193 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 DDR2Q16832 855 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 DUOXA2Q1HG44 320 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 FBXO43Q4G163 708 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 AASDHQ4L235 1098 aaPredicted RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 SDHAF4Q5VUM1 108 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 TXNDC8Q6A555 127 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 CRELD2Q6UXH1 353 aaPredicted RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 VASH1Q7L8A9 365 aaPredicted RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 HS2ST1Q7LGA3 356 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 LRRTM3Q86VH5 581 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 WDR5BQ86VZ2 330 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 TOP6BLQ8N6T0 577 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 DDX1Q92499 740 aaKnown RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 USP13Q92995 863 aaPredicted RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 ACDQ96AP0 544 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 FUBP3Q96I24 572 aaKnown RBP eCLIP8.31□□□□□ -1.08
VPS50-204ENST00000438395 HPDLQ96IR7 371 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 ZNF396Q96N95 335 aaPredicted RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 CLIC6Q96NY7 704 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 LRRC3BQ96PB8 259 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 FNBP1Q96RU3 617 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 MMS19Q96T76 1030 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 P2RY13Q9BPV8 354 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 CBWD1Q9BRT8 395 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 PANK2Q9BZ23 570 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 IKZF4Q9H2S9 585 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 ZSCAN16Q9H4T2 348 aaPredicted RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 PCIF1Q9H4Z3 704 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 KIAA1586Q9HCI6 787 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 PARD6AQ9NPB6 346 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 SEMA4GQ9NTN9 838 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 DUS2Q9NX74 493 aaKnown RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 FKBPLQ9UIM3 349 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 CCL26Q9Y258 94 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.31□□□□□ -1.08
VPS50-204ENST00000438395 MYH11P35749 1972 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 DCHS1Q96JQ0 3298 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 PATJQ8NI35 1801 aa8.31□□□□□ -1.08
VPS50-204ENST00000438395 K7ESF4 209 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 PRPF6O94906 941 aaKnown RBP8.3□□□□□ -1.08
VPS50-204ENST00000438395 F11P03951 625 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 DLATP10515 647 aaKnown RBP8.3□□□□□ -1.08
VPS50-204ENST00000438395 ARSAP15289 507 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 HMGA1P17096 107 aaKnown RBP8.3□□□□□ -1.08
VPS50-204ENST00000438395 DRD1P21728 446 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 CYP2F1P24903 491 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 MAGEA11P43364 429 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 CASP5P51878 434 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 TNNC1P63316 161 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 CYP27A1Q02318 531 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 FAM160A1Q05DH4 1040 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 DMWDQ09019 674 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 PSMD2Q13200 908 aa8.3□□□□□ -1.08
VPS50-204ENST00000438395 GAS6Q14393 721 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms