RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 TRIP11Q15643 1979 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 WDR91A4D1P6 747 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 A6NNZ2 444 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 TREHO43280 583 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 AVILO75366 819 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 LRCH4O75427 683 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 TNNC2P02585 160 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 HNRNPH1P31943 449 aaKnown RBP9.95□□□□□ -0.82
CUX1-206ENST00000437600 ABCD1P33897 745 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 ZNF132P52740 706 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 RAD23BP54727 409 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 OTUD4Q01804 1114 aaKnown RBP9.95□□□□□ -0.82
CUX1-206ENST00000437600 C1QBPQ07021 282 aaKnown RBP9.95□□□□□ -0.82
CUX1-206ENST00000437600 PTK6Q13882 451 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 EFTUD2Q15029 972 aaKnown RBP eCLIP9.95□□□□□ -0.828e-8■■■■□ 20.9
CUX1-206ENST00000437600 CLUL1Q15846 466 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 TUBB8Q3ZCM7 444 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 MSS51Q4VC12 460 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 ZNF667Q5HYK9 610 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 KATNAL2Q8IYT4 538 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 C7orf31Q8N865 590 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 EXD1Q8NHP7 514 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 TMEM40Q8WWA1 233 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 ANKRD36BP1Q96IX9 119 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 EIF2AQ9BY44 585 aaKnown RBP9.95□□□□□ -0.82
CUX1-206ENST00000437600 B3GNT5Q9BYG0 378 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 ELOVL4Q9GZR5 314 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 ALG13Q9NP73 1137 aaKnown RBP9.95□□□□□ -0.82
CUX1-206ENST00000437600 PRMT7Q9NVM4 692 aaPredicted RBP9.95□□□□□ -0.82
CUX1-206ENST00000437600 SLC5A4Q9NY91 659 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 KLK14Q9P0G3 267 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 A0A1W2PPM1 405 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 RASA4BC9J798 803 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 RASA4O43374 803 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 TSPAN1O60635 241 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 AGTP01019 485 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 C6orf222P0C671 652 aaPredicted RBP9.94□□□□□ -0.82
CUX1-206ENST00000437600 SMIM10L2AP0DMW4 78 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 SMIM10L2BP0DMW5 78 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 AKAP5P24588 427 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 KLRC2P26717 231 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 CACNB2Q08289 660 aaPredicted RBP9.94□□□□□ -0.82
CUX1-206ENST00000437600 ZNF467Q7Z7K2 595 aaPredicted RBP9.94□□□□□ -0.82
CUX1-206ENST00000437600 UNC45BQ8IWX7 931 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 SCUBE3Q8IX30 993 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 CCDC89Q8N998 374 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 FAM71DQ8N9W8 422 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 SOCS4Q8WXH5 440 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 TRIM11Q96F44 468 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 HAUS2Q9NVX0 235 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 SUFUQ9UMX1 484 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 TNFSF13BQ9Y275 285 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 SCINQ9Y6U3 715 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 RBM47A0AV96 593 aaKnown RBP9.94□□□□□ -0.82
CUX1-206ENST00000437600 M0QYV0 167 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 MAGEB2O15479 319 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 NPTXRO95502 500 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 CYP2C9P11712 490 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 PRKAR2AP13861 404 aaKnown RBP9.94□□□□□ -0.82
CUX1-206ENST00000437600 CDKN2BP42772 138 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 PDIA2Q13087 525 aaKnown RBP9.94□□□□□ -0.82
CUX1-206ENST00000437600 PKN2Q16513 984 aaKnown RBP9.94□□□□□ -0.82
CUX1-206ENST00000437600 FAXCQ5TGI0 409 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 CATSPER4Q7RTX7 472 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 RCOR2Q8IZ40 523 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 SLC4A11Q8NBS3 891 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 KCTD6Q8NC69 237 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 MIS12Q9H081 205 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 ABCF3Q9NUQ8 709 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 SNTG2Q9NY99 539 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 CNTN6Q9UQ52 1028 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 ZNF236Q9UL36 1845 aa9.94□□□□□ -0.82
CUX1-206ENST00000437600 TCRBV5S1A1TA0A578 114 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 ASAP2O43150 1006 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 PSTPIP1O43586 416 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 TJP3O95049 919 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 ATXN1P54253 815 aaKnown RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 CCDC142Q17RM4 750 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 TFDP3Q5H9I0 405 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 FAM102AQ5T9C2 384 aaPredicted RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 IQSEC1Q6DN90 963 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 C1orf228Q6PIY5 440 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 TRMT10CQ7L0Y3 403 aaKnown RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 SESTD1Q86VW0 696 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 LINC01465Q8N7H1 131 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 SH3TC2Q8TF17 1288 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 DONSONQ9NYP3 566 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 GNEQ9Y223 722 aaKnown RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 hCG_1818297A0A087WSY0 165 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 EXOC1LA0A1B0GW35 172 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 PDGFRBP09619 1106 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 KRT15P19012 456 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 TFE3P19532 575 aaPredicted RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 IGFBP6P24592 240 aaPredicted RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 MIPP30301 263 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 NDST1P52848 882 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 RABGGTBP53611 331 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 ACTN3Q08043 901 aaPredicted RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 FNBP1LQ5T0N5 605 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 OR6B2Q6IFH4 312 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms