RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-205ENST00000433888 FPR3P25089 353 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 KCNJ5P48544 419 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 SLC11A2P49281 568 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 ALDH5A1P51649 535 aaPredicted RBP4.78□□□□□ -1.64
PTPN4-205ENST00000433888 WNT3P56703 355 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 RAPGEF1Q13905 1077 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 TWIST1Q15672 202 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 ZDHHC17Q8IUH5 632 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 NRACQ8N912 160 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 PRSS3P2Q8NHM4 247 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 RSPRY1Q96DX4 576 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 VCPIP1Q96JH7 1222 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 PRR25Q96S07 402 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 CGRRF1Q99675 332 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 FAM118BQ9BPY3 351 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 CIPCQ9C0C6 399 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 SARS2Q9NP81 518 aaKnown RBP4.78□□□□□ -1.64
PTPN4-205ENST00000433888 TRNAU1APQ9NX07 287 aaKnown RBP4.78□□□□□ -1.64
PTPN4-205ENST00000433888 MTMR4Q9NYA4 1195 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 ZNF580Q9UK33 172 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 CCNL1Q9UK58 526 aaPredicted RBP4.78□□□□□ -1.64
PTPN4-205ENST00000433888 TMX2Q9Y320 296 aa4.78□□□□□ -1.64
PTPN4-205ENST00000433888 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.78□□□□□ -1.64
PTPN4-205ENST00000433888 USP1O94782 785 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 VNN1O95497 513 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 CYP2C9P11712 490 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 MYCLP12524 364 aaPredicted RBP4.77□□□□□ -1.65
PTPN4-205ENST00000433888 POLGP54098 1239 aaPredicted RBP4.77□□□□□ -1.65
PTPN4-205ENST00000433888 HTRA4P83105 476 aaPredicted RBP4.77□□□□□ -1.65
PTPN4-205ENST00000433888 PSG6Q00889 435 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 E2F1Q01094 437 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 CERKLQ49MI3 558 aaPredicted RBP4.77□□□□□ -1.65
PTPN4-205ENST00000433888 ATAT1Q5SQI0 421 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 BCDIN3DQ7Z5W3 292 aaKnown RBP4.77□□□□□ -1.65
PTPN4-205ENST00000433888 CAND1Q86VP6 1230 aaKnown RBP4.77□□□□□ -1.65
PTPN4-205ENST00000433888 GAS2L3Q86XJ1 694 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 SLC15A3Q8IY34 581 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 IZUMO1Q8IYV9 350 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 NANOGP1Q8N7R0 232 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.77□□□□□ -1.65
PTPN4-205ENST00000433888 OSCP1Q8WVF1 389 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 BRIP1Q9BX63 1249 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 ADGRE3Q9BY15 652 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 LUC7L2Q9Y383 392 aaKnown RBP4.77□□□□□ -1.65
PTPN4-205ENST00000433888 SNX14Q9Y5W7 946 aa4.77□□□□□ -1.65
PTPN4-205ENST00000433888 A0A087WWL8 130 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 A0A088AWK7 358 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 LY6G6EA0A0G2JKS1 128 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 UBE2Q2LH0YL09 131 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 AP4M1O00189 453 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 A1BGP04217 495 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 ARFIP2P53365 341 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 KRTAP10-7P60409 375 aaPredicted RBP4.76□□□□□ -1.65
PTPN4-205ENST00000433888 LRRC41Q15345 812 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 FAM187BQ17R55 369 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 CCDC157Q569K6 752 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 RUSC1-AS1Q66K80 236 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 DPY19L3Q6ZPD9 716 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 MRPL10Q7Z7H8 261 aaKnown RBP4.76□□□□□ -1.65
PTPN4-205ENST00000433888 ADAMTS18Q8TE60 1221 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 NUP88Q99567 741 aaPredicted RBP4.76□□□□□ -1.65
PTPN4-205ENST00000433888 DPCDQ9BVM2 203 aaPredicted RBP4.76□□□□□ -1.65
PTPN4-205ENST00000433888 STXBP5LQ9Y2K9 1186 aa4.76□□□□□ -1.65
PTPN4-205ENST00000433888 FGAP02671 866 aa4.75□□□□□ -1.65
PTPN4-205ENST00000433888 XRCC6P12956 609 aaKnown RBP eCLIP4.75□□□□□ -1.65
PTPN4-205ENST00000433888 HOXD9P28356 352 aaPredicted RBP4.75□□□□□ -1.65
PTPN4-205ENST00000433888 PLCD1P51178 756 aa4.75□□□□□ -1.65
PTPN4-205ENST00000433888 TRIM71Q2Q1W2 868 aaKnown RBP4.75□□□□□ -1.65
PTPN4-205ENST00000433888 C10orf25Q5T742 122 aa4.75□□□□□ -1.65
PTPN4-205ENST00000433888 SERPINA13PQ6UXR4 307 aa4.75□□□□□ -1.65
PTPN4-205ENST00000433888 PIP4P1Q86T03 277 aa4.75□□□□□ -1.65
PTPN4-205ENST00000433888 SFTPA1Q8IWL2 248 aa4.75□□□□□ -1.65
PTPN4-205ENST00000433888 PNISRQ8TF01 805 aaKnown RBP4.75□□□□□ -1.65
PTPN4-205ENST00000433888 CHMP4CQ96CF2 233 aa4.75□□□□□ -1.65
PTPN4-205ENST00000433888 C1GALT1C1Q96EU7 318 aa4.75□□□□□ -1.65
PTPN4-205ENST00000433888 P2RX7Q99572 595 aaKnown RBP4.75□□□□□ -1.65
PTPN4-205ENST00000433888 DPH1Q9BZG8 443 aa4.75□□□□□ -1.65
PTPN4-205ENST00000433888 EBF3Q9H4W6 596 aa4.75□□□□□ -1.65
PTPN4-205ENST00000433888 ARMT1Q9H993 441 aa4.75□□□□□ -1.65
PTPN4-205ENST00000433888 LRP12Q9Y561 859 aa4.75□□□□□ -1.65
PTPN4-205ENST00000433888 BTBD19C9JJ37 291 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 SNHG28P0DPA3 235 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 PRF1P14222 555 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 VCAM1P19320 739 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 KRTAP10-6P60371 365 aaPredicted RBP4.74□□□□□ -1.65
PTPN4-205ENST00000433888 RAB1AP62820 205 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 FGL2Q14314 439 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 RBMS2Q15434 407 aaKnown RBP4.74□□□□□ -1.65
PTPN4-205ENST00000433888 MGAT5BQ3V5L5 792 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 BRDTQ58F21 947 aaPredicted RBP4.74□□□□□ -1.65
PTPN4-205ENST00000433888 SHC4Q6S5L8 630 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 SLC15A4Q8N697 577 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 DNAJC5GQ8N7S2 189 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 CTHRC1Q96CG8 243 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 FYTTD1Q96QD9 318 aaKnown RBP4.74□□□□□ -1.65
PTPN4-205ENST00000433888 EFHD1Q9BUP0 239 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 TRIM54Q9BYV2 358 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 SLC12A5Q9H2X9 1139 aa4.74□□□□□ -1.65
PTPN4-205ENST00000433888 TRMT13Q9NUP7 481 aaKnown RBP4.74□□□□□ -1.65
PTPN4-205ENST00000433888 CPA4Q9UI42 421 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms