RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 ABRAQ8N0Z2 381 aa4.16□□□□□ -1.74
CLK1-204ENST00000432425 ABHD11Q8NFV4 315 aa4.16□□□□□ -1.74
CLK1-204ENST00000432425 SOCS4Q8WXH5 440 aa4.16□□□□□ -1.74
CLK1-204ENST00000432425 ANKS1AQ92625 1134 aa4.16□□□□□ -1.74
CLK1-204ENST00000432425 TPCN1Q9ULQ1 816 aa4.16□□□□□ -1.74
CLK1-204ENST00000432425 G3BP2Q9UN86 482 aaKnown RBP4.16□□□□□ -1.74
CLK1-204ENST00000432425 FER1L4A9Z1Z3 1794 aa4.16□□□□□ -1.74
CLK1-204ENST00000432425 MYO1FO00160 1098 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 TBX3O15119 743 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 CACNB3P54284 484 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 SUMO3P55854 103 aaPredicted RBP4.15□□□□□ -1.75
CLK1-204ENST00000432425 TFF2Q03403 129 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 PROSER3Q2NL68 480 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 SWSAP1Q6NVH7 229 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 APOA5Q6Q788 366 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 CAND1Q86VP6 1230 aaKnown RBP4.15□□□□□ -1.75
CLK1-204ENST00000432425 TMEM171Q8WVE6 324 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 PPP2R3CQ969Q6 453 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 REPS1Q96D71 796 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 PPP1R9BQ96SB3 815 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 C22orf23Q9BZE7 217 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 A1CFQ9NQ94 594 aaKnown RBP4.15□□□□□ -1.75
CLK1-204ENST00000432425 SACM1LQ9NTJ5 587 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 FLRT1Q9NZU1 646 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 L1RE1Q9UN81 338 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 SNX14Q9Y5W7 946 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 USP19O94966 1318 aa4.15□□□□□ -1.75
CLK1-204ENST00000432425 GOLGA6CA6NDK9 693 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 GOLGA6BA6NDN3 693 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 MBD3L4A6NDZ8 208 aaPredicted RBP4.14□□□□□ -1.75
CLK1-204ENST00000432425 MBD3L3A6NE82 208 aaPredicted RBP4.14□□□□□ -1.75
CLK1-204ENST00000432425 CGB1A6NKQ9 187 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 ISM1B1AKI9 464 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 PSMD9O00233 223 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 FRS3O43559 492 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 TSPAN6O43657 245 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 CELA2AP08217 269 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 GOLGA6DP0CG33 693 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 CYP4F2P78329 520 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 HOXA4Q00056 320 aaPredicted RBP4.14□□□□□ -1.75
CLK1-204ENST00000432425 INSCQ1MX18 579 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 CERCAMQ5T4B2 595 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 PRAMEF17Q5VTA0 474 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 MTHFD1LQ6UB35 978 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 TRIM72Q6ZMU5 477 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 ZNF782Q6ZMW2 699 aaPredicted RBP4.14□□□□□ -1.75
CLK1-204ENST00000432425 CCDC149Q6ZUS6 474 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 MAML1Q92585 1016 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 SPSB4Q96A44 273 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 DAZAP1Q96EP5 407 aaKnown RBP4.14□□□□□ -1.75
CLK1-204ENST00000432425 SLC29A3Q9BZD2 475 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 SEMA4CQ9C0C4 833 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 GOLGA6AQ9NYA3 693 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 CPNE7Q9UBL6 633 aa4.14□□□□□ -1.75
CLK1-204ENST00000432425 RASSF9O75901 435 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 TJP3O95049 919 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 ZKSCAN1P17029 563 aaPredicted RBP4.13□□□□□ -1.75
CLK1-204ENST00000432425 KLRC1P26715 233 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 CERS1P27544 350 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 CTGFP29279 349 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 PRKAR1BP31321 381 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 TUBA4AP68366 448 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 LY6KQ17RY6 165 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 L1TD1Q5T7N2 865 aaKnown RBP4.13□□□□□ -1.75
CLK1-204ENST00000432425 CACHD1Q5VU97 1274 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 SLC9A4Q6AI14 798 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 SRGAP1Q7Z6B7 1085 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 MYO1HQ8N1T3 1032 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 VGLL2Q8N8G2 317 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 OR56A3Q8NH54 315 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 CYP2W1Q8TAV3 490 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 LRTOMTQ8WZ04 291 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 LRRC27Q9C0I9 530 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 OGDHLQ9ULD0 1010 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 GABRQQ9UN88 632 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 TRIM43BA6NCK2 446 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 DNAJC9-AS1A6NH13 148 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 PYCARD-AS1I3L0S3 204 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 RGS10O43665 173 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 MGEA5O60502 916 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 RASAL1O95294 804 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 VNN1O95497 513 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 MTHFSP49914 203 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 E2F1Q01094 437 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 CCNIQ14094 377 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 CNGA2Q16280 664 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 PTCHD3Q3KNS1 767 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 RNF220Q5VTB9 566 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 DARS2Q6PI48 645 aaKnown RBP4.13□□□□□ -1.75
CLK1-204ENST00000432425 DPY19L3Q6ZPD9 716 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 DNAJB14Q8TBM8 379 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 TRIM43Q96BQ3 446 aaPredicted RBP4.13□□□□□ -1.75
CLK1-204ENST00000432425 MACROD1Q9BQ69 325 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 C17orf80Q9BSJ5 609 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 STK31Q9BXU1 1019 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 GBA2Q9HCG7 927 aaPredicted RBP4.13□□□□□ -1.75
CLK1-204ENST00000432425 STK32BQ9NY57 414 aa4.13□□□□□ -1.75
CLK1-204ENST00000432425 AFF4Q9UHB7 1163 aaKnown RBP4.13□□□□□ -1.75
CLK1-204ENST00000432425 DDX20Q9UHI6 824 aaKnown RBP4.13□□□□□ -1.75
CLK1-204ENST00000432425 HDAC9Q9UKV0 1011 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms