RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CACNG4Q9UBN1 327 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 HERC5Q9UII4 1024 aaKnown RBP9.05□□□□□ -0.96
USP40-203ENST00000427112 NEMP1O14524 444 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 GGPS1O95749 300 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 OAS1P00973 400 aaKnown RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 C4BPAP04003 597 aaKnown RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 PDGFRBP09619 1106 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 GNAT1P11488 350 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 CD1EP15812 388 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 ATP4AP20648 1035 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 CA8P35219 290 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 PGM1P36871 562 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 RPL10AP62906 217 aaKnown RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 KLF1Q13351 362 aaPredicted RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 KRT81Q14533 505 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 SNX30Q5VWJ9 437 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 ANO7Q6IWH7 933 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 CTU1Q7Z7A3 348 aaKnown RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 CLNKQ7Z7G1 428 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 SCUBE3Q8IX30 993 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 PDIK1LQ8N165 341 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 ZCCHC9Q8N567 271 aaKnown RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 MORC4Q8TE76 937 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 SCG3Q8WXD2 468 aaKnown RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 DNAJC9Q8WXX5 260 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 A1CFQ9NQ94 594 aaKnown RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 NMRK1Q9NWW6 199 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 PSMC3IPQ9P2W1 217 aaPredicted RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 AFG3L2Q9Y4W6 797 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 HES2Q9Y543 173 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 CNTNAP1P78357 1384 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 DOCK5Q9H7D0 1870 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 GOLGA8QA0A0J9YX86 632 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 GOLGA8OA6NCC3 632 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 GOLGA8NF8WBI6 632 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 PSAPP07602 524 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 TPBGLP0DKB5 382 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 TCN1P20061 433 aaPredicted RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 ACO1P21399 889 aaKnown RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 ANXA13P27216 316 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 MAN1A1P33908 653 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 BTKQ06187 659 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 TCHHL1Q5QJ38 904 aaPredicted RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 FOXR2Q6PJQ5 311 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 MOB2Q70IA6 237 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 DEFB132Q7Z7B7 95 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 USP37Q86T82 979 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 FAM160B2Q86V87 743 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 C4orf19Q8IY42 314 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 NIM1KQ8IY84 436 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 WDTC1Q8N5D0 677 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 ABTB1Q969K4 478 aaPredicted RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 RNPEPL1Q9HAU8 725 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 KANSL3Q9P2N6 904 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 ZNFX1Q9P2E3 1918 aaKnown RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 PRRC2BQ5JSZ5 2229 aaKnown RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 VWA5AO00534 786 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 FCHO1O14526 889 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 COPEO14579 308 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 EXTL3O43909 919 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 ITGB3P05106 788 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 LINGO3P0C6S8 592 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 MIPP30301 263 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 AQP5P55064 265 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 VCPP55072 806 aaKnown RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 GEMIN4P57678 1058 aaKnown RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 ZNF568Q3ZCX4 644 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 CCDC62Q6P9F0 684 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 PTAR1Q7Z6K3 402 aaPredicted RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 MCF2L2Q86YR7 1114 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 ARFGAP1Q8N6T3 406 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 C10orf82Q8WW14 230 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 MARK4Q96L34 752 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 RAB3IPQ96QF0 476 aaPredicted RBP9.04□□□□□ -0.96
USP40-203ENST00000427112 TRIM55Q9BYV6 548 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 EBF2Q9HAK2 575 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 C17orf75Q9HAS0 396 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 GGA2Q9UJY4 613 aa9.04□□□□□ -0.96
USP40-203ENST00000427112 ATXN2Q99700 1313 aaKnown RBP9.03□□□□□ -0.96
USP40-203ENST00000427112 hCG_1818297A0A087WSY0 165 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 CFLARO15519 480 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 LRCH4O75427 683 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 SETSIPP0DME0 302 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 NELFEP18615 380 aaKnown RBP9.03□□□□□ -0.96
USP40-203ENST00000427112 RBL1P28749 1068 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 CCND2P30279 289 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 PTGER2P43116 358 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 TMEM132BQ14DG7 1078 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 CA9Q16790 459 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 TFDP3Q5H9I0 405 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 ALLCQ8N6M5 410 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 STK32AQ8WU08 396 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 NRG4Q8WWG1 115 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 AZIN2Q96A70 460 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 MFSD14AQ96MC6 490 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 TMEM165Q9HC07 324 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 PRKAG3Q9UGI9 489 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 IP6K2Q9UHH9 426 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 RABGEF1Q9UJ41 708 aa9.03□□□□□ -0.96
USP40-203ENST00000427112 TCRBV9S1A1TA0A576 114 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms