RNA–Protein interactions for RNA: ENST00000425413.5

UBR4-207, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 2,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-207ENST00000425413 GOLGA2P5Q9HBQ8 144 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 FGFR1OP2Q9NVK5 253 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 LRRC37A2A6NM11 1700 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 DICER1Q9UPY3 1922 aaKnown RBP12.13□□□□□ -0.47
UBR4-207ENST00000425413 GLTPD2A6NH11 291 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 RASA4BC9J798 803 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 RASA4O43374 803 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 VDRP11473 427 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 EIF3EP60228 445 aaKnown RBP12.13□□□□□ -0.47
UBR4-207ENST00000425413 DGKDQ16760 1214 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 FAM187BQ17R55 369 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 CCDC142Q17RM4 750 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 ZC3H12AQ5D1E8 599 aaKnown RBP12.13□□□□□ -0.47
UBR4-207ENST00000425413 MFSD5Q6N075 450 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 PMF1Q6P1K2 205 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 C4orf33Q8N1A6 199 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 PTPN18Q99952 460 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 NFKBIZQ9BYH8 718 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 MAGEB5Q9BZ81 275 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 OSBPL7Q9BZF2 842 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 HEY1Q9Y5J3 304 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 ADORA2BP29275 332 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 HOXA11P31270 313 aaPredicted RBP12.12□□□□□ -0.47
UBR4-207ENST00000425413 ZNF268Q14587 947 aaPredicted RBP12.12□□□□□ -0.47
UBR4-207ENST00000425413 EFTUD2Q15029 972 aaKnown RBP eCLIP12.12□□□□□ -0.471e-6■■■□□ 16.5
UBR4-207ENST00000425413 BBS9Q3SYG4 887 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 MSS51Q4VC12 460 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 PPP6R3Q5H9R7 873 aaPredicted RBP12.12□□□□□ -0.47
UBR4-207ENST00000425413 CROCCP2Q86T23 111 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 NIPA2Q8N8Q9 360 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 SLC35B2Q8TB61 432 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 SPATA18Q8TC71 538 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 DNAJB3Q8WWF6 145 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 CCDC77Q9BR77 488 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 RBP3P10745 1247 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 KRT15P19012 456 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 TFE3P19532 575 aaPredicted RBP12.12□□□□□ -0.47
UBR4-207ENST00000425413 SSTR1P30872 391 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 RPL22P35268 128 aaKnown RBP12.12□□□□□ -0.47
UBR4-207ENST00000425413 COPS2P61201 443 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 BEX3Q00994 111 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 DUSP28Q4G0W2 176 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 FAXCQ5TGI0 409 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 NUGGCQ68CJ6 796 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 CLEC4CQ8WTT0 213 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 MAK16Q9BXY0 300 aaKnown RBP12.12□□□□□ -0.47
UBR4-207ENST00000425413 CACNG4Q9UBN1 327 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 GJD2Q9UKL4 321 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 NME7Q9Y5B8 376 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 TRUB2O95900 331 aaKnown RBP12.12□□□□□ -0.47
UBR4-207ENST00000425413 GTF2A2P52657 109 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 ATXN1P54253 815 aaKnown RBP12.12□□□□□ -0.47
UBR4-207ENST00000425413 FNBP1LQ5T0N5 605 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 ZNF618Q5T7W0 954 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 RNASEH2BQ5TBB1 312 aaKnown RBP12.12□□□□□ -0.47
UBR4-207ENST00000425413 DARS2Q6PI48 645 aaKnown RBP12.12□□□□□ -0.47
UBR4-207ENST00000425413 C6orf89Q6UWU4 347 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 TTC30AQ86WT1 665 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 CCDC197Q8NCU1 140 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 NKD2Q969F2 451 aaPredicted RBP12.12□□□□□ -0.47
UBR4-207ENST00000425413 MCRS1Q96EZ8 462 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 RNF39Q9H2S5 420 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 ITGA11Q9UKX5 1188 aa12.12□□□□□ -0.47
UBR4-207ENST00000425413 PIN4Q9Y237 131 aaKnown RBP12.12□□□□□ -0.47
UBR4-207ENST00000425413 F5H423 210 aaPredicted RBP12.11□□□□□ -0.47
UBR4-207ENST00000425413 H7C0C1 242 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 DNM1LO00429 736 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 PRPSAP2O60256 369 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 CDH16O75309 829 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 RECQL4O94761 1208 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 HMGCRP04035 888 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 ITGAVP06756 1048 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 PFKMP08237 780 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 CYP2C9P11712 490 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 CCDC130P13994 396 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 GPD1P21695 349 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 ATICP31939 592 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 ATP5OP48047 213 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 MNAT1P51948 309 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 HIC1Q14526 733 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 KRT81Q14533 505 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 PKN2Q16513 984 aaKnown RBP12.11□□□□□ -0.47
UBR4-207ENST00000425413 HIF1AQ16665 826 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 TNFAIP8L3Q5GJ75 292 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 FAM47EQ6ZV65 393 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 BBS12Q6ZW61 710 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 POLNQ7Z5Q5 900 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 PLEKHH3Q7Z736 793 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 NETO2Q8NC67 525 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.11□□□□□ -0.47
UBR4-207ENST00000425413 CYP3A43Q9HB55 503 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 PCDH9Q9HC56 1237 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 ASNSD1Q9NWL6 643 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 SAMD15Q9P1V8 674 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 A8MXQ7 604 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 STRNO43815 780 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 CELF2O95319 508 aaKnown RBP12.11□□□□□ -0.47
UBR4-207ENST00000425413 CPP00450 1065 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 SMIM10L2AP0DMW4 78 aa12.11□□□□□ -0.47
UBR4-207ENST00000425413 SMIM10L2BP0DMW5 78 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms