RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CDCA7Q9BWT1 371 aaPredicted RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 RBM38Q9H0Z9 239 aaKnown RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 ZNF395Q9H8N7 513 aaPredicted RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 BLOC1S6Q9UL45 172 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 CHMP2BQ9UQN3 213 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 SSX2IPQ9Y2D8 614 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 SIPA1L1O43166 1804 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 TCRBV9S1A1TA0A576 114 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 ATP5BP06576 529 aaKnown RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 CDKN2BP42772 138 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 RARRES1P49788 294 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 NCKAP1LP55160 1127 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 PLCB3Q01970 1234 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 IKQ13123 557 aaPredicted RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 NCOA4Q13772 614 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 BBS9Q3SYG4 887 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 KBTBD12Q3ZCT8 623 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 TBC1D10BQ4KMP7 808 aaPredicted RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 TFDP3Q5H9I0 405 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 ZFYVE27Q5T4F4 411 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 LRRC38Q5VT99 294 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 OLFML2BQ68BL8 750 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 RBM44Q6ZP01 1051 aaKnown RBP11.17□□□□□ -0.62
USP54-204ENST00000422491 IGDCC3Q8IVU1 814 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 BTBD9Q96Q07 612 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 TEKT3Q9BXF9 490 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 SIRPGQ9P1W8 387 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 IP6K2Q9UHH9 426 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 ZHX2Q9Y6X8 837 aa11.17□□□□□ -0.62
USP54-204ENST00000422491 hCG_2014768A0A024R1R8 64 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 CASQ2O14958 399 aaPredicted RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 ZC3H11AO75152 810 aaKnown RBP eCLIP11.16□□□□□ -0.62
USP54-204ENST00000422491 FAM155BO75949 473 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 C6orf222P0C671 652 aaPredicted RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 RPL5P46777 297 aaKnown RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 HIRAP54198 1017 aaPredicted RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 PSMC5P62195 406 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 GTF2IP78347 998 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 TMPRSS15P98073 1019 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 SLC25A3Q00325 362 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 BTKQ06187 659 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 SULT2A1Q06520 285 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 NFIAQ12857 509 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 PGM2L1Q6PCE3 622 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 KLHDC10Q6PID8 442 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 ZFPM1Q8IX07 1006 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 METTL25Q8N6Q8 603 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 GMCL1P1Q8NEA9 526 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 SLC26A7Q8TE54 656 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 E2F7Q96AV8 911 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 FAM84AQ96KN4 292 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 FBXL18Q96ME1 805 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 C10orf88Q9H8K7 445 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 HBS1LQ9Y450 684 aaKnown RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 QSER1Q2KHR3 1735 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 SDR42E2A6NKP2 422 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 COPEO14579 308 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 PEX1O43933 1283 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 ATP6V1G1O75348 118 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 CFBP00751 764 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 RPL22P35268 128 aaKnown RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 PEX3P56589 373 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 MRPS5P82675 430 aaKnown RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 ZNF200P98182 395 aaPredicted RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 FOLH1Q04609 750 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 CYP24A1Q07973 514 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 MTMR2Q13614 643 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 ATG16L1Q676U5 607 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 CDC42EP5Q6NZY7 148 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 TRIM72Q6ZMU5 477 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 TRIM42Q8IWZ5 723 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 PDIK1LQ8N165 341 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 ACSF2Q96CM8 615 aaPredicted RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 CATSPER2Q96P56 530 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 EBF4Q9BQW3 602 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 C20orf27Q9GZN8 174 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 C1orf112Q9NSG2 853 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 PARVAQ9NVD7 372 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 MARCOQ9UEW3 520 aaPredicted RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 POLLQ9UGP5 575 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 PLLPQ9Y342 182 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 STRCQ7RTU9 1775 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 TMEM191CA6NGB0 347 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 ARHGAP42A6NI28 874 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 SNNO75324 88 aaPredicted RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 SORBS2O94875 1100 aaKnown RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 C1QAP02745 245 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 INHBAP08476 426 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 TMEM191BP0C7N4 346 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 KITP10721 976 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 CDK4P11802 303 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 SSTR3P32745 418 aaPredicted RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 EMP3P54852 163 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 C1QBPQ07021 282 aaKnown RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 SFSWAPQ12872 951 aaKnown RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 SNAPC2Q13487 334 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 PLA2G4FQ68DD2 849 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 TMC7Q7Z402 723 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms