RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 ERBB2P04626 1255 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 CFHP08603 1231 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 PDGFRBP09619 1106 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 PTPN1P18031 435 aaKnown RBP6.28□□□□□ -1.4
HMGB3-202ENST00000419110 LAG3P18627 525 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 PSMA2P25787 234 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 CTNNA2P26232 953 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 TKTP29401 623 aaKnown RBP6.28□□□□□ -1.4
HMGB3-202ENST00000419110 CTNNA1P35221 906 aaKnown RBP6.28□□□□□ -1.4
HMGB3-202ENST00000419110 GJC1P36383 396 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 SCNN1AP37088 669 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 CETN2P41208 172 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 SLC1A1P43005 524 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 BRCC3P46736 316 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 PLA2G4AP47712 749 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 GATMP50440 423 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 AFF1P51825 1210 aaKnown RBP6.28□□□□□ -1.4
HMGB3-202ENST00000419110 BCAR1P56945 870 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 WDR5P61964 334 aaKnown RBP6.28□□□□□ -1.4
HMGB3-202ENST00000419110 PLCB3Q01970 1234 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 ADIGQ0VDE8 80 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 PTP4A2Q12974 167 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 NFE2Q16621 373 aaPredicted RBP6.28□□□□□ -1.4
HMGB3-202ENST00000419110 PTPROQ16827 1216 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 CFAP221Q4G0U5 840 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 TIGD5Q53EQ6 642 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 ODF2Q5BJF6 829 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 TEX35Q5T0J7 233 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 SPOUT1Q5T280 376 aaKnown RBP6.28□□□□□ -1.4
HMGB3-202ENST00000419110 PPP1R26Q5T8A7 1209 aaPredicted RBP6.28□□□□□ -1.4
HMGB3-202ENST00000419110 OR6B2Q6IFH4 312 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 MFSD5Q6N075 450 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 FUT10Q6P4F1 479 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 FAM183BPQ6ZVS7 135 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 SLFN11Q7Z7L1 901 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 NT5DC3Q86UY8 548 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 TTC30AQ86WT1 665 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 XYLT1Q86Y38 959 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 CMTR2Q8IYT2 770 aaKnown RBP6.28□□□□□ -1.4
HMGB3-202ENST00000419110 CRYBG2Q8N1P7 616 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 C12orf29Q8N999 325 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 ANKRD52Q8NB46 1076 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 FEZF2Q8TBJ5 459 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 MYCBPAPQ8TBZ2 947 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 KCNV2Q8TDN2 545 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 FNIP1Q8TF40 1166 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 STK32AQ8WU08 396 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 PBKQ96KB5 322 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 CASD1Q96PB1 797 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 CPXM1Q96SM3 734 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 PSMB7Q99436 277 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 HNRNPABQ99729 332 aaKnown RBP6.28□□□□□ -1.4
HMGB3-202ENST00000419110 PAAF1Q9BRP4 392 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 TRIM62Q9BVG3 475 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 CARD6Q9BX69 1037 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 TLR10Q9BXR5 811 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 GOLPH3Q9H4A6 298 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 DMAP1Q9NPF5 467 aaPredicted RBP6.28□□□□□ -1.4
HMGB3-202ENST00000419110 IL23AQ9NPF7 189 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 MIOSQ9NXC5 875 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 COG5Q9UP83 839 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 SHROOM3Q8TF72 1996 aa6.27□□□□□ -1.4
HMGB3-202ENST00000419110 ANAPC1Q9H1A4 1944 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 OR6C75A6NL08 312 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 ZBBXA8MT70 800 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 EFCAB8A8MWE9 144 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 H7C4K7 107 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 HCRTO43612 131 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 CEP104O60308 925 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 B4GALT3O60512 393 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 HSF2BPO75031 334 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 DAB1O75553 588 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 AP1G2O75843 785 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 DDHD2O94830 711 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 FBXO21O94952 628 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 UPP2O95045 317 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 KRT1P04264 644 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 ITGB1P05556 798 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 KRT3P12035 628 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 CPB1P15086 417 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 PRLRP16471 622 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 GPD1P21695 349 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 COMTP21964 271 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 GTF2F1P35269 517 aaKnown RBP eCLIP6.27□□□□□ -1.41
HMGB3-202ENST00000419110 PPM1AP35813 382 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 GPD2P43304 727 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 SSR1P43307 286 aaKnown RBP6.27□□□□□ -1.41
HMGB3-202ENST00000419110 GABRB2P47870 512 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 SLC11A1P49279 550 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 RGS7P49802 495 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 COPS2P61201 443 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 TUBB4BP68371 445 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 FPGSQ05932 587 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 PDE4CQ08493 712 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 MAMLD1Q13495 774 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 PIGHQ14442 188 aaPredicted RBP6.27□□□□□ -1.41
HMGB3-202ENST00000419110 ZNF268Q14587 947 aaPredicted RBP6.27□□□□□ -1.41
HMGB3-202ENST00000419110 GPNMBQ14956 572 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 PKDCCQ504Y2 493 aa6.27□□□□□ -1.41
HMGB3-202ENST00000419110 C2CD6Q53TS8 623 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms