RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 FKBP15Q5T1M5 1219 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 STXBP5Q5T5C0 1151 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 DENND5BQ6ZUT9 1274 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 GAREM2Q75VX8 874 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 RNF135Q8IUD6 432 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 ZDHHC14Q8IZN3 488 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 ZMIZ2Q8NF64 920 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 ST13P5Q8NFI4 369 aaPredicted RBP13.23□□□□□ -0.29
SKA1-203ENST00000417656 JAKMIP2Q96AA8 810 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 MCRS1Q96EZ8 462 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 SPATA17Q96L03 361 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 GCNAQ96QF7 691 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 KCNK16Q96T55 309 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 SMOQ99835 787 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.23□□□□□ -0.29
SKA1-203ENST00000417656 EPS15L1Q9UBC2 864 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 FHOD1Q9Y613 1164 aa13.23□□□□□ -0.29
SKA1-203ENST00000417656 ZNF638Q14966 1978 aaKnown RBP13.23□□□□□ -0.29
SKA1-203ENST00000417656 RNF225M0QZC1 329 aaPredicted RBP13.22□□□□□ -0.29
SKA1-203ENST00000417656 ASGR2P07307 311 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 LAMP2P13473 410 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 BRD2P25440 801 aaKnown RBP13.22□□□□□ -0.29
SKA1-203ENST00000417656 CDC25CP30307 473 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 KLK7P49862 253 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 ZNF132P52740 706 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 MFAP3P55082 362 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 MAP3K7CLP57077 242 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 SGO2Q562F6 1265 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 ARHGAP17Q68EM7 881 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 DPY19L2P1Q6NXN4 242 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 CLEC20AQ6ZU45 233 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 ENOSF1Q7L5Y1 443 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 TMEM150AQ86TG1 271 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 PLCD3Q8N3E9 789 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 TRMT2BQ96GJ1 504 aaKnown RBP13.22□□□□□ -0.29
SKA1-203ENST00000417656 ATXN3LQ9H3M9 355 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 LIMD1Q9UGP4 676 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 DNAJC12Q9UKB3 198 aa13.22□□□□□ -0.29
SKA1-203ENST00000417656 TTC28Q96AY4 2481 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 O00370 1275 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 MICAL2O94851 1124 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 FGF19O95750 216 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 PAEPP09466 180 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 PNMA6AP0CW24 399 aaPredicted RBP13.21□□□□□ -0.29
SKA1-203ENST00000417656 VDRP11473 427 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 NPR3P17342 541 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 SLC5A3P53794 718 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 HTR4Q13639 388 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 RAPGEF1Q13905 1077 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 GPR158Q5T848 1215 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 LRSAM1Q6UWE0 723 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 GPRIN1Q7Z2K8 1008 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 TTC30AQ86WT1 665 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 TFAP2BQ92481 460 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 SHC3Q92529 594 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 KHSRPQ92945 711 aaKnown RBP eCLIP13.21□□□□□ -0.297e-7■■■□□ 16.7
SKA1-203ENST00000417656 FAM81BQ96LP2 452 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 MYRFLQ96LU7 910 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 CEP295NLQ96MC4 621 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 ZSWIM1Q9BR11 485 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 TTLL2Q9BWV7 592 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 GANQ9H2C0 597 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 TSPY26PQ9H489 355 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 SLITRK6Q9H5Y7 841 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 CSNK1G1Q9HCP0 422 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 PLSCR2Q9NRY7 297 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 UXTQ9UBK9 157 aaPredicted RBP13.21□□□□□ -0.29
SKA1-203ENST00000417656 MUTYHQ9UIF7 546 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 TSPAN16Q9UKR8 245 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 CNTN6Q9UQ52 1028 aa13.21□□□□□ -0.29
SKA1-203ENST00000417656 ZFP37Q9Y6Q3 630 aaPredicted RBP13.21□□□□□ -0.29
SKA1-203ENST00000417656 ANAPC1Q9H1A4 1944 aa13.21□□□□□ -0.3
SKA1-203ENST00000417656 HELZP42694 1942 aaKnown RBP13.2□□□□□ -0.3
SKA1-203ENST00000417656 TNFRSF10BO14763 440 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 EPHB6O15197 1021 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 CAVIN2O95810 425 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 F11P03951 625 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 USP8P40818 1118 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 TPM4P67936 248 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 UBXN1Q04323 297 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 SYCP1Q15431 976 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 PTPN21Q16825 1174 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 ARHGAP15Q53QZ3 475 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 KLHDC7AQ5VTJ3 777 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 NUP93Q8N1F7 819 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 SCAMP5Q8TAC9 235 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 RSAD2Q8WXG1 361 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 FGF14Q92915 247 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 ZSWIM3Q96MP5 696 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 DUSP16Q9BY84 665 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 ACP6Q9NPH0 428 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 FAM207AQ9NSI2 230 aaPredicted RBP13.2□□□□□ -0.3
SKA1-203ENST00000417656 GDE1Q9NZC3 331 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.2□□□□□ -0.3
SKA1-203ENST00000417656 SIK3Q9Y2K2 1263 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 NUMBLQ9Y6R0 609 aa13.2□□□□□ -0.3
SKA1-203ENST00000417656 NCANO14594 1321 aa13.19□□□□□ -0.3
SKA1-203ENST00000417656 HHLA1C9JL84 531 aa13.19□□□□□ -0.3
SKA1-203ENST00000417656 ANHXE9PGG2 379 aa13.19□□□□□ -0.3
SKA1-203ENST00000417656 GOLGA6L19H0YKK7 550 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms