RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 CALB1P05937 261 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 EIF4BP23588 611 aaKnown RBP10.34□□□□□ -0.75
SS18-203ENST00000415083 KCNJ11Q14654 390 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 PRKD1Q15139 912 aaPredicted RBP10.34□□□□□ -0.75
SS18-203ENST00000415083 POLNQ7Z5Q5 900 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 PPIL6Q8IXY8 311 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 CMASQ8NFW8 434 aaPredicted RBP10.34□□□□□ -0.75
SS18-203ENST00000415083 FGD4Q96M96 766 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 CAMKK2Q96RR4 588 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 CCDC77Q9BR77 488 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 ELOVL4Q9GZR5 314 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 NIF3L1Q9GZT8 377 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 USP29Q9HBJ7 922 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 METTL5Q9NRN9 209 aaKnown RBP10.34□□□□□ -0.75
SS18-203ENST00000415083 LNPEPQ9UIQ6 1025 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 NME7Q9Y5B8 376 aa10.34□□□□□ -0.75
SS18-203ENST00000415083 NFKBIEO00221 500 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 MAFO75444 373 aaPredicted RBP10.33□□□□□ -0.76
SS18-203ENST00000415083 CALB2P22676 271 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 ELK3P41970 407 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 GCLCP48506 637 aaPredicted RBP10.33□□□□□ -0.76
SS18-203ENST00000415083 MRPS5P82675 430 aaKnown RBP10.33□□□□□ -0.76
SS18-203ENST00000415083 LMNB2Q03252 620 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 FAAP100Q0VG06 881 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 PIGHQ14442 188 aaPredicted RBP10.33□□□□□ -0.76
SS18-203ENST00000415083 SLC45A4Q5BKX6 768 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 MAP1SQ66K74 1059 aaPredicted RBP10.33□□□□□ -0.76
SS18-203ENST00000415083 CENPUQ71F23 418 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 SCYL3Q8IZE3 742 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 LRRC71Q8N4P6 559 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 SLC4A11Q8NBS3 891 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 ZNF280CQ8ND82 737 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 WDR60Q8WVS4 1066 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 PLCD4Q9BRC7 762 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 SMYD3Q9H7B4 428 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 FETUBQ9UGM5 382 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 PCSK1NQ9UHG2 260 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 CHMP2BQ9UQN3 213 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 TCRBV9S1A1TA0A576 114 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 TOP3BO95985 862 aaKnown RBP10.33□□□□□ -0.76
SS18-203ENST00000415083 MIPP30301 263 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 EN1Q05925 392 aaPredicted RBP10.33□□□□□ -0.76
SS18-203ENST00000415083 SLC18A2Q05940 514 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 DPYSL3Q14195 570 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 KBTBD12Q3ZCT8 623 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 SLFN12LQ6IEE8 588 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 NIM1KQ8IY84 436 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 LRRC8CQ8TDW0 803 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 STK32AQ8WU08 396 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 TRAPPC12Q8WVT3 735 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 FAM167BQ9BTA0 163 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 BCO2Q9BYV7 579 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 TXLNGQ9NUQ3 528 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 BTBD7Q9P203 1132 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 TTLL3Q9Y4R7 772 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 PIK3R2O00459 728 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 PFKMP08237 780 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 PSMA2P25787 234 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 OAZ1P54368 228 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 OSTNP61366 133 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 BLMHQ13867 455 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 LY6KQ17RY6 165 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 DCUN1D2Q6PH85 259 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 PHC3Q8NDX5 983 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 MECRQ9BV79 373 aa10.33□□□□□ -0.76
SS18-203ENST00000415083 XPO7Q9UIA9 1087 aaKnown RBP10.33□□□□□ -0.76
SS18-203ENST00000415083 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.33□□□□□ -0.76
SS18-203ENST00000415083 SCN1AP35498 2009 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 A0A1B0GUA9 196 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 KBTBD13C9JR72 458 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 TRUB2O95900 331 aaKnown RBP10.32□□□□□ -0.76
SS18-203ENST00000415083 GSRP00390 522 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 PEX19P40855 299 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 TREML2Q5T2D2 321 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 C4orf50Q6ZRC1 276 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 ZNF534Q76KX8 674 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 VSIG1Q86XK7 387 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 TREML1Q86YW5 311 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 C1orf127Q8N9H9 656 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 TMEM35BQ8NCS4 154 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 FAM136AQ96C01 138 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 IGKV6-21A0A0C4DH24 114 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 H0Y3Z8 333 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 ZWINTO95229 277 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 LDHAP00338 332 aaKnown RBP10.32□□□□□ -0.76
SS18-203ENST00000415083 KRT3P12035 628 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 BGNP21810 368 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 EDNRBP24530 442 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 PTDSS1P48651 473 aaKnown RBP10.32□□□□□ -0.76
SS18-203ENST00000415083 CCNHP51946 323 aaPredicted RBP10.32□□□□□ -0.76
SS18-203ENST00000415083 PLCB3Q01970 1234 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 LAMTOR4Q0VGL1 99 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 GRM1Q13255 1194 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 C15orf59Q2T9L4 293 aaPredicted RBP10.32□□□□□ -0.76
SS18-203ENST00000415083 ACSBG2Q5FVE4 666 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 NAIF1Q69YI7 327 aaPredicted RBP10.32□□□□□ -0.76
SS18-203ENST00000415083 CIAPIN1Q6FI81 312 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 ZPBP2Q6X784 338 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 CAND1Q86VP6 1230 aaKnown RBP10.32□□□□□ -0.76
SS18-203ENST00000415083 PYROXD1Q8WU10 500 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms