RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 EIF1ADQ8N9N8 165 aaKnown RBP12.45□□□□□ -0.42
PTPRF-205ENST00000414879 LRRC37BQ96QE4 947 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 IRX2Q9BZI1 471 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-205ENST00000414879 DMAP1Q9NPF5 467 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-205ENST00000414879 GRID1Q9ULK0 1009 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 MAGEB16A2A368 324 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 CFAP73A6NFT4 308 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 EFCAB14O75071 495 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 CRYBB1P53674 252 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-205ENST00000414879 MARSP56192 900 aaKnown RBP12.45□□□□□ -0.42
PTPRF-205ENST00000414879 SATB1Q01826 763 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 POLD3Q15054 466 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-205ENST00000414879 DUSP28Q4G0W2 176 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 CPB2Q96IY4 423 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 YME1L1Q96TA2 773 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 EGFL8Q99944 293 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 SNTG2Q9NY99 539 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 SLC13A4Q9UKG4 626 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 WDR91A4D1P6 747 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 BTNL10A8MVZ5 291 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 HADHAP40939 763 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 TMEM161BQ8NDZ6 487 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 SERPINB11Q96P15 392 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 SLC45A1Q9Y2W3 748 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 UBA6A0AVT1 1052 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-205ENST00000414879 TRIM66O15016 1216 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 FKTNO75072 461 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 KIF19Q2TAC6 998 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 GLRA4Q5JXX5 417 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 FAM172AQ8WUF8 416 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 STAMBPL1Q96FJ0 436 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 HSFY1Q96LI6 401 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 CINPQ9BW66 212 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-205ENST00000414879 DCLK3Q9C098 648 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 KRT82Q9NSB4 513 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 DDX43Q9NXZ2 648 aaKnown RBP12.44□□□□□ -0.42
PTPRF-205ENST00000414879 GTSE1Q9NYZ3 720 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 FAM47DPA6NHR8 397 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 HACD1B0YJ81 288 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 ZNF185O15231 689 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 PTENP60484 403 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 MRPS6P82932 125 aaKnown RBP12.44□□□□□ -0.42
PTPRF-205ENST00000414879 POU5F1Q01860 360 aaKnown RBP12.44□□□□□ -0.42
PTPRF-205ENST00000414879 TTLL9Q3SXZ7 439 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 LRRC38Q5VT99 294 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 C3orf20Q8ND61 904 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 VAT1Q99536 393 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 NDFIP2Q9NV92 336 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 ZFP69BQ9UJL9 534 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 USP18Q9UMW8 372 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 PLCH1Q4KWH8 1693 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 LRRIQ3A6PVS8 624 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-205ENST00000414879 H2AFYO75367 372 aaKnown RBP12.44□□□□□ -0.42
PTPRF-205ENST00000414879 GLRA2P23416 452 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 RRM1P23921 792 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 CCR1P32246 355 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 LIG3P49916 1009 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 POU5F1BQ06416 359 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 PDAP1Q13442 181 aaKnown RBP12.44□□□□□ -0.42
PTPRF-205ENST00000414879 FASTKD1Q53R41 847 aaKnown RBP12.44□□□□□ -0.42
PTPRF-205ENST00000414879 TMCO4Q5TGY1 634 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 DCLK2Q8N568 766 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 LRRC52Q8N7C0 313 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 C18orf25Q96B23 403 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-205ENST00000414879 CCDC126Q96EE4 140 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 MS4A14Q96JA4 679 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 RRP15Q9Y3B9 282 aaKnown RBP12.44□□□□□ -0.42
PTPRF-205ENST00000414879 PKP3Q9Y446 797 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 SMIM35A0A1B0GVV1 85 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 ZNF263O14978 683 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 ADCY6O43306 1168 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 KLRC4O43908 158 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 ITGA8P53708 1063 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 PDCLQ13371 301 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 CDH18Q13634 790 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 MRNIPQ6NTE8 343 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 SPOCD1Q6ZMY3 1216 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 NLRP9Q7RTR0 991 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 FAXDC2Q96IV6 333 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 CLMNQ96JQ2 1002 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 OXCT2Q9BYC2 517 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-205ENST00000414879 AP4E1Q9UPM8 1137 aa12.44□□□□□ -0.42
PTPRF-205ENST00000414879 A0A0G2JND7 137 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 GNGT2O14610 69 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 GRAP2O75791 330 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 PSEN1P49768 467 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 CLNS1AP54105 237 aaKnown RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 SMARCB1Q12824 385 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 TERF2Q15554 542 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 POTEAQ6S8J7 498 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 CDR2LQ86X02 465 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 CCNYL1Q8N7R7 359 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 RPRD1AQ96P16 312 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.43□□□□□ -0.422e-6■□□□□ 10.5
PTPRF-205ENST00000414879 TRHDEQ9UKU6 1024 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 A0A087X0B3 334 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 LACTBL1A8MY62 500 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 TIMM44O43615 452 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 PPP1R37O75864 691 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 RARGP13631 454 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms