RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 E2F8A0AVK6 867 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 TRIM3O75382 744 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 BMP3P12645 472 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 CBX5P45973 191 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 VAC14Q08AM6 782 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 NUAK2Q9H093 628 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 IRAK3Q9Y616 596 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 PRXQ9BXM0 1461 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 QPRTQ15274 297 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 PCNX4Q63HM2 1172 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 USP13Q92995 863 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 ZNF560Q96MR9 790 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 CATSPERBQ9H7T0 1116 aa13.79□□□□□ -0.2
CCDC88A-204ENST00000413716 CPB1P15086 417 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 BNC1Q01954 994 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 MTMR1Q13613 665 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 MPP2Q14168 576 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 NEDD8Q15843 81 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 SUPT20HL1Q3ZLR7 823 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 MYH15Q9Y2K3 1946 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 TRIM66O15016 1216 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 GEMIN4P57678 1058 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 CYP24A1Q07973 514 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 C4orf46Q504U0 113 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 FAM213AQ9BRX8 229 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 GSDMCQ9BYG8 508 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 GOLPH3Q9H4A6 298 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 EHD1Q9H4M9 534 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 SNX9Q9Y5X1 595 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 HMGXB3Q12766 1538 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 H3BN98 237 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 NR5A2O00482 541 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 TCEA3O75764 348 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 PTSQ03393 145 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 IRAK1BP1Q5VVH5 260 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 CYB5D1Q6P9G0 228 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 SPATA2LQ8IUW3 424 aaPredicted RBP13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 CHKBQ9Y259 395 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 PNMA6EA0A0J9YXQ4 647 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 DSG3P32926 999 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 AP3M2P53677 418 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 ERICH5Q6P6B1 374 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 CD248Q9HCU0 757 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 DSEQ9UL01 958 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 BAIAP2Q9UQB8 552 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 SNX17Q15036 470 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 ELOVL6Q9H5J4 265 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 KLHL41O60662 606 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 MLXQ9UH92 298 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 EEPD1Q7L9B9 569 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 EEF1AKMT1Q8WVE0 214 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 DDX18Q9NVP1 670 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 PPIEQ9UNP9 301 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 NQO1P15559 274 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 PTH1RQ03431 593 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 PYDC2Q56P42 97 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 FAM228AQ86W67 206 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 THNSL1Q8IYQ7 743 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 SPATA4Q8NEY3 305 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 YEATS2Q9ULM3 1422 aa13.78□□□□□ -0.2
CCDC88A-204ENST00000413716 ABCA5Q8WWZ7 1642 aa13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 PARNO95453 639 aaKnown RBP13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 FOSL1P15407 271 aa13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 GALNT3Q14435 633 aa13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 PDK1Q15118 436 aa13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 PABPC5Q96DU9 382 aaKnown RBP13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 GNB5O14775 395 aa13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 GATAD2AQ86YP4 633 aa13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 SPATA18Q8TC71 538 aa13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 PIGOQ8TEQ8 1089 aa13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 C1QTNF1Q9BXJ1 281 aa13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 ROPN1BQ9BZX4 212 aaPredicted RBP13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 ROPN1Q9HAT0 212 aaPredicted RBP13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 CCDC177Q9NQR7 707 aaPredicted RBP13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 MYRFQ9Y2G1 1151 aa13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 R3HDM2Q9Y2K5 976 aaKnown RBP13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 RGS10O43665 173 aa13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 HNRNPH1P31943 449 aaKnown RBP13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 SCRN3Q0VDG4 424 aa13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 TRMT5Q32P41 509 aaKnown RBP13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 ZNF746Q6NUN9 644 aaPredicted RBP13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 RTKN2Q8IZC4 609 aa13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 CRNNQ9UBG3 495 aaPredicted RBP13.77□□□□□ -0.2
CCDC88A-204ENST00000413716 LOC100506127A0A0U1RQW1 187 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 C1orf189Q5VU69 101 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 EIF3MQ7L2H7 374 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 ADGRF5Q8IZF2 1346 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 HLA-DQA2P01906 255 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 CPA2P48052 419 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 CEBPGP53567 150 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 SEL1L3Q68CR1 1132 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 ZNF605Q86T29 641 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 CCDC3Q9BQI4 270 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 BHMT2Q9H2M3 363 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 ANXA6P08133 673 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 RPS8P62241 208 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 MARK2Q7KZI7 788 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 MARK1Q9P0L2 795 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 PCNAP12004 261 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 CACNA2D1P54289 1103 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms