RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 KCTD6Q8NC69 237 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 OR6B3Q8NGW1 331 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 RXFP2Q8WXD0 754 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 TSPAN18Q96SJ8 248 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 TMEM121Q9BTD3 319 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 FRMD8P1Q9BZ68 369 aaPredicted RBP21.12■□□□□ 0.97
USP39-204ENST00000409766 SAE1Q9UBE0 346 aaPredicted RBP21.12■□□□□ 0.97
USP39-204ENST00000409766 RSPH14Q9UHP6 348 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 DNALI1O14645 258 aaPredicted RBP21.11■□□□□ 0.97
USP39-204ENST00000409766 TNPO2O14787 897 aaKnown RBP21.11■□□□□ 0.97
USP39-204ENST00000409766 AGTP01019 485 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 SETSIPP0DME0 302 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 GNAT1P11488 350 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 ETS1P14921 441 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 PDGFRAP16234 1089 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 PSMC4P43686 418 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 DYNLT1P63172 113 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 AUHQ13825 339 aaKnown RBP21.11■□□□□ 0.97
USP39-204ENST00000409766 KYNUQ16719 465 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 OLFML1Q6UWY5 402 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 CYP4V2Q6ZWL3 525 aaPredicted RBP21.11■□□□□ 0.97
USP39-204ENST00000409766 ZCCHC9Q8N567 271 aaKnown RBP21.11■□□□□ 0.97
USP39-204ENST00000409766 C7orf31Q8N865 590 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 TTC13Q8NBP0 860 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 ACTL9Q8TC94 416 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 PEBP4Q96S96 227 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 FOXP3Q9BZS1 431 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 DNAH12Q6ZR08 3092 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 SLCO1A2P46721 670 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 INHBEP58166 350 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 IFI35P80217 286 aaPredicted RBP21.11■□□□□ 0.97
USP39-204ENST00000409766 OTUD4Q01804 1114 aaKnown RBP21.11■□□□□ 0.97
USP39-204ENST00000409766 PLCB3Q01970 1234 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 ARHGAP17Q68EM7 881 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 KBTBD7Q8WVZ9 684 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 DPEP3Q9H4B8 488 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 CNOT10Q9H9A5 744 aaKnown RBP21.11■□□□□ 0.97
USP39-204ENST00000409766 GDAP2Q9NXN4 497 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 NINJ2Q9NZG7 142 aa21.11■□□□□ 0.97
USP39-204ENST00000409766 KPNA7A9QM74 516 aa21.1■□□□□ 0.97
USP39-204ENST00000409766 SPTLC1O15269 473 aa21.1■□□□□ 0.97
USP39-204ENST00000409766 GABBR2O75899 941 aa21.1■□□□□ 0.97
USP39-204ENST00000409766 ENDOD1O94919 500 aa21.1■□□□□ 0.97
USP39-204ENST00000409766 AKR1A1P14550 325 aa21.1■□□□□ 0.97
USP39-204ENST00000409766 CCT5P48643 541 aa21.1■□□□□ 0.97
USP39-204ENST00000409766 C15orf59Q2T9L4 293 aaPredicted RBP21.1■□□□□ 0.97
USP39-204ENST00000409766 SMG8Q8ND04 991 aaKnown RBP21.1■□□□□ 0.97
USP39-204ENST00000409766 STK32AQ8WU08 396 aa21.1■□□□□ 0.97
USP39-204ENST00000409766 HSPH1Q92598 858 aa21.1■□□□□ 0.97
USP39-204ENST00000409766 KHSRPQ92945 711 aaKnown RBP eCLIP21.1■□□□□ 0.97
USP39-204ENST00000409766 PCDH9Q9HC56 1237 aa21.1■□□□□ 0.97
USP39-204ENST00000409766 ZFYVE28Q9HCC9 887 aa21.1■□□□□ 0.97
USP39-204ENST00000409766 HESX1Q9UBX0 185 aa21.1■□□□□ 0.97
USP39-204ENST00000409766 IPPQ9Y573 584 aa21.1■□□□□ 0.97
USP39-204ENST00000409766 A8MXQ7 604 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 XPOTO43592 962 aaKnown RBP21.09■□□□□ 0.97
USP39-204ENST00000409766 GRAP2O75791 330 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 SLC10A3P09131 477 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 CTGFP29279 349 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 MMP13P45452 471 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 SOX4Q06945 474 aaPredicted RBP21.09■□□□□ 0.97
USP39-204ENST00000409766 PDE4CQ08493 712 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 GPS1Q13098 491 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 RAB6CQ53S08 254 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 ZNF560Q96MR9 790 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 LPIN3Q9BQK8 851 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 RAB6CQ9H0N0 254 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 TPX2Q9ULW0 747 aaKnown RBP21.09■□□□□ 0.97
USP39-204ENST00000409766 MYADML2A6NDP7 307 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 SGK1O00141 431 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 DPYSL4O14531 572 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 NDUFAB1O14561 156 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 HCRTO43612 131 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 DUSP11O75319 330 aaKnown RBP21.09■□□□□ 0.97
USP39-204ENST00000409766 FGFR1P11362 822 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 PNPLA4P41247 253 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 SEC24CP53992 1094 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 SLC6A3Q01959 620 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 PPARDQ03181 441 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 CRHR2Q13324 411 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 LONRF1Q17RB8 773 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 CCDC14Q49A88 953 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 LIMS2Q7Z4I7 341 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 SCUBE3Q8IX30 993 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 CRYBG2Q8N1P7 616 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 ARRDC4Q8NCT1 418 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 TRPV1Q8NER1 839 aa21.09■□□□□ 0.97
USP39-204ENST00000409766 STMN4Q9H169 189 aaPredicted RBP21.09■□□□□ 0.97
USP39-204ENST00000409766 MORF4L2Q15014 288 aa21.08■□□□□ 0.97
USP39-204ENST00000409766 CEP128Q6ZU80 1094 aa21.08■□□□□ 0.97
USP39-204ENST00000409766 SESTD1Q86VW0 696 aa21.08■□□□□ 0.97
USP39-204ENST00000409766 CFAP57Q96MR6 1250 aa21.08■□□□□ 0.97
USP39-204ENST00000409766 SERPINB12Q96P63 405 aa21.08■□□□□ 0.97
USP39-204ENST00000409766 RBM15Q96T37 977 aaKnown RBP eCLIP21.08■□□□□ 0.97
USP39-204ENST00000409766 CALN1Q9BXU9 219 aa21.08■□□□□ 0.97
USP39-204ENST00000409766 RSAD1Q9HA92 442 aa21.08■□□□□ 0.97
USP39-204ENST00000409766 GOLGA2P5Q9HBQ8 144 aa21.08■□□□□ 0.97
USP39-204ENST00000409766 APOC4-APOC2K7ER74 178 aa21.07■□□□□ 0.96
USP39-204ENST00000409766 PAPSS1O43252 624 aaPredicted RBP21.07■□□□□ 0.96
USP39-204ENST00000409766 TCEA3O75764 348 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms