RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 TSPY1Q01534 308 aa13.11□□□□□ -0.31
CHMP3-204ENST00000409727 PLCB3Q01970 1234 aa13.11□□□□□ -0.31
CHMP3-204ENST00000409727 TAP1Q03518 808 aa13.11□□□□□ -0.31
CHMP3-204ENST00000409727 LLGL1Q15334 1064 aa13.11□□□□□ -0.31
CHMP3-204ENST00000409727 CFAP221Q4G0U5 840 aa13.11□□□□□ -0.31
CHMP3-204ENST00000409727 AADACL2Q6P093 401 aa13.11□□□□□ -0.31
CHMP3-204ENST00000409727 UBE2Q1Q7Z7E8 422 aa13.11□□□□□ -0.31
CHMP3-204ENST00000409727 TMEM110Q86TL2 294 aa13.11□□□□□ -0.31
CHMP3-204ENST00000409727 C7orf61Q8IZ16 206 aa13.11□□□□□ -0.31
CHMP3-204ENST00000409727 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.11□□□□□ -0.31
CHMP3-204ENST00000409727 BCL7CQ8WUZ0 217 aaPredicted RBP13.11□□□□□ -0.31
CHMP3-204ENST00000409727 NDRG1Q92597 394 aaKnown RBP13.11□□□□□ -0.31
CHMP3-204ENST00000409727 BADQ92934 168 aa13.11□□□□□ -0.31
CHMP3-204ENST00000409727 CD101Q93033 1021 aa13.11□□□□□ -0.31
CHMP3-204ENST00000409727 MCRS1Q96EZ8 462 aa13.11□□□□□ -0.31
CHMP3-204ENST00000409727 XPO1O14980 1071 aaKnown RBP13.1□□□□□ -0.31
CHMP3-204ENST00000409727 CTIFO43310 598 aaKnown RBP13.1□□□□□ -0.31
CHMP3-204ENST00000409727 TCF4P15884 667 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 SYN1P17600 705 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 BDNFP23560 247 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 CTNNA1P35221 906 aaKnown RBP13.1□□□□□ -0.31
CHMP3-204ENST00000409727 GTF2F1P35269 517 aaKnown RBP eCLIP13.1□□□□□ -0.31
CHMP3-204ENST00000409727 SLC1A1P43005 524 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 PLA2G4AP47712 749 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 TERF1P54274 439 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 ARPP19P56211 112 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 TAS2R40P59535 323 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 ADIGQ0VDE8 80 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 ELF2Q15723 593 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 VARS2Q5ST30 1063 aaKnown RBP13.1□□□□□ -0.31
CHMP3-204ENST00000409727 FUT10Q6P4F1 479 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 OLFML1Q6UWY5 402 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 ADAT2Q7Z6V5 191 aaKnown RBP13.1□□□□□ -0.31
CHMP3-204ENST00000409727 NOA1Q8NC60 698 aaKnown RBP13.1□□□□□ -0.31
CHMP3-204ENST00000409727 UBXN4Q92575 508 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 GOLGA1Q92805 767 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 PBKQ96KB5 322 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 SMOQ99835 787 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 TMEM175Q9BSA9 504 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 EPC1Q9H2F5 836 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 TMEM30AQ9NV96 361 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 SF3B1O75533 1304 aaKnown RBP eCLIP13.1□□□□□ -0.31
CHMP3-204ENST00000409727 CCDC66A2RUB6 948 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 EFCAB8A8MWE9 144 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 CAPN2P17655 700 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 GSCP56915 257 aaPredicted RBP13.1□□□□□ -0.31
CHMP3-204ENST00000409727 SNX16P57768 344 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 SLC6A3Q01959 620 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 CTXN3Q4LDR2 81 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 SLC39A12Q504Y0 691 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 ZFYVE27Q5T4F4 411 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 FAM171BQ6P995 826 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 TAS1R1Q7RTX1 841 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 SPATA18Q8TC71 538 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 STK32AQ8WU08 396 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 SMARCD1Q96GM5 515 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 RNPC3Q96LT9 517 aaKnown RBP13.1□□□□□ -0.31
CHMP3-204ENST00000409727 PGLYRP2Q96PD5 576 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 CWH43Q9H720 699 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 LRRC4Q9HBW1 653 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 IL23AQ9NPF7 189 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 KLHL11Q9NVR0 708 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 PCDHA3Q9Y5H8 950 aa13.1□□□□□ -0.31
CHMP3-204ENST00000409727 SYN3O14994 580 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 PYGMP11217 842 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 FLT3P36888 993 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 NDUFV1P49821 464 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 PEX5P50542 639 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 BTG3Q14201 252 aaPredicted RBP13.09□□□□□ -0.31
CHMP3-204ENST00000409727 PIGHQ14442 188 aaPredicted RBP13.09□□□□□ -0.31
CHMP3-204ENST00000409727 CDO1Q16878 200 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 RTP2Q5QGT7 225 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 TRNP1Q6NT89 227 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 CC2D1AQ6P1N0 951 aaPredicted RBP13.09□□□□□ -0.31
CHMP3-204ENST00000409727 ZNF365Q70YC5 407 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 C16orf59Q7L2K0 433 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 GPRIN1Q7Z2K8 1008 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 SPATA2LQ8IUW3 424 aaPredicted RBP13.09□□□□□ -0.31
CHMP3-204ENST00000409727 SIX6OS1Q8N1H7 587 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 ZMIZ2Q8NF64 920 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 RXFP2Q8WXD0 754 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 YME1L1Q96TA2 773 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 PKMYT1Q99640 499 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 AP1M1Q9BXS5 423 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 ABI2Q9NYB9 513 aaPredicted RBP13.09□□□□□ -0.31
CHMP3-204ENST00000409727 LTBP2Q14767 1821 aa13.09□□□□□ -0.31
CHMP3-204ENST00000409727 OAZ2O95190 189 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 FGGP02679 453 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 RHOXF2BP0C7M4 288 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 PDGFRAP16234 1089 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 GPD1P21695 349 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 CTNNA2P26232 953 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 ACADSBP45954 432 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 TKTL1P51854 596 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 RWDD2BP57060 319 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 ATP11AP98196 1134 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 FPGSQ05932 587 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 C15orf59Q2T9L4 293 aaPredicted RBP13.08□□□□□ -0.32
CHMP3-204ENST00000409727 SH3PXD2AQ5TCZ1 1133 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 RHOT1Q8IXI2 618 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms