RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SLC10A6Q3KNW5 377 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 IGDCC3Q8IVU1 814 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 C3orf20Q8ND61 904 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 ADAM32Q8TC27 787 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 HAO1Q9UJM8 370 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 TIMM13Q9Y5L4 95 aaPredicted RBP14.02□□□□□ -0.16
VPS54-203ENST00000409558 PMM2O15305 246 aa14.02□□□□□ -0.17
VPS54-203ENST00000409558 FSBPO95073 299 aa14.02□□□□□ -0.17
VPS54-203ENST00000409558 CBX6O95503 412 aa14.02□□□□□ -0.17
VPS54-203ENST00000409558 ELK3P41970 407 aa14.02□□□□□ -0.17
VPS54-203ENST00000409558 MSH2P43246 934 aa14.02□□□□□ -0.17
VPS54-203ENST00000409558 SESN3P58005 492 aa14.02□□□□□ -0.17
VPS54-203ENST00000409558 ZNF618Q5T7W0 954 aa14.02□□□□□ -0.17
VPS54-203ENST00000409558 FAM183BPQ6ZVS7 135 aa14.02□□□□□ -0.17
VPS54-203ENST00000409558 PEBP4Q96S96 227 aa14.02□□□□□ -0.17
VPS54-203ENST00000409558 MRPL45Q9BRJ2 306 aaKnown RBP14.02□□□□□ -0.17
VPS54-203ENST00000409558 ERAP1Q9NZ08 941 aa14.02□□□□□ -0.17
VPS54-203ENST00000409558 SLC17A7Q9P2U7 560 aa14.02□□□□□ -0.17
VPS54-203ENST00000409558 TUBGCP4Q9UGJ1 667 aa14.02□□□□□ -0.17
VPS54-203ENST00000409558 TOP3BO95985 862 aaKnown RBP14.01□□□□□ -0.17
VPS54-203ENST00000409558 HMGCRP04035 888 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 ZNF200P98182 395 aaPredicted RBP14.01□□□□□ -0.17
VPS54-203ENST00000409558 ZBTB16Q05516 673 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 MBTD1Q05BQ5 628 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 PAN2Q504Q3 1202 aaKnown RBP14.01□□□□□ -0.17
VPS54-203ENST00000409558 PPP1R26Q5T8A7 1209 aaPredicted RBP14.01□□□□□ -0.17
VPS54-203ENST00000409558 C9orf131Q5VYM1 1079 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 SPATS2Q86XZ4 545 aaKnown RBP14.01□□□□□ -0.17
VPS54-203ENST00000409558 FAM167AQ96KS9 214 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 TMEM134Q9H6X4 195 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 DPP3Q9NY33 737 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 SLC17A6Q9P2U8 582 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 STYXL1Q9Y6J8 313 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 GMPRP36959 345 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 PDIK1LQ8N165 341 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 ACAP3Q96P50 834 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 MPHOSPH6Q99547 160 aaKnown RBP14.01□□□□□ -0.17
VPS54-203ENST00000409558 VPS33BQ9H267 617 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 MFHAS1Q9Y4C4 1052 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 MKI67P46013 3256 aaKnown RBP14.01□□□□□ -0.17
VPS54-203ENST00000409558 A8MXQ7 604 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 H3BRB1 525 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 CPA2P48052 419 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 XYLT1Q86Y38 959 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 ERO1BQ86YB8 467 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 CNPY4Q8N129 248 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 ZCCHC9Q8N567 271 aaKnown RBP14.01□□□□□ -0.17
VPS54-203ENST00000409558 CPT1BQ92523 772 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 EIF2AQ9BY44 585 aaKnown RBP14.01□□□□□ -0.17
VPS54-203ENST00000409558 TUT1Q9H6E5 874 aaKnown RBP14.01□□□□□ -0.17
VPS54-203ENST00000409558 IFT122Q9HBG6 1241 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 UBN1Q9NPG3 1134 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.01□□□□□ -0.17
VPS54-203ENST00000409558 SOCS7O14512 581 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 RBL1P28749 1068 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 ICAM3P32942 547 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 MCL1Q07820 350 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 PMF1Q6P1K2 205 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 CES3Q6UWW8 571 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 FAM131BQ86XD5 332 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 ANKRD13AQ8IZ07 590 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 FAM111AQ96PZ2 611 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 PAFAH2Q99487 392 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 ROPN1BQ9BZX4 212 aaPredicted RBP14.01□□□□□ -0.17
VPS54-203ENST00000409558 ROPN1Q9HAT0 212 aaPredicted RBP14.01□□□□□ -0.17
VPS54-203ENST00000409558 GRID1Q9ULK0 1009 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 PHTF1Q9UMS5 762 aa14.01□□□□□ -0.17
VPS54-203ENST00000409558 COL11A1P12107 1806 aaPredicted RBP14□□□□□ -0.17
VPS54-203ENST00000409558 HACE1Q8IYU2 909 aa14□□□□□ -0.17
VPS54-203ENST00000409558 FAM172AQ8WUF8 416 aa14□□□□□ -0.17
VPS54-203ENST00000409558 KCNG1Q9UIX4 513 aa14□□□□□ -0.17
VPS54-203ENST00000409558 CREB3O43889 395 aa14□□□□□ -0.17
VPS54-203ENST00000409558 HBP1O60381 514 aa14□□□□□ -0.17
VPS54-203ENST00000409558 UGT1A9O60656 530 aa14□□□□□ -0.17
VPS54-203ENST00000409558 IGFBP6P24592 240 aaPredicted RBP14□□□□□ -0.17
VPS54-203ENST00000409558 GRIA1P42261 906 aa14□□□□□ -0.17
VPS54-203ENST00000409558 ABCG1P45844 678 aa14□□□□□ -0.17
VPS54-203ENST00000409558 NME3Q13232 169 aa14□□□□□ -0.17
VPS54-203ENST00000409558 STAT4Q14765 748 aa14□□□□□ -0.17
VPS54-203ENST00000409558 CCNYQ8ND76 341 aa14□□□□□ -0.17
VPS54-203ENST00000409558 AGAP3Q96P47 875 aa14□□□□□ -0.17
VPS54-203ENST00000409558 MECRQ9BV79 373 aa14□□□□□ -0.17
VPS54-203ENST00000409558 ZNF395Q9H8N7 513 aaPredicted RBP14□□□□□ -0.17
VPS54-203ENST00000409558 UGT1A7Q9HAW7 530 aa14□□□□□ -0.17
VPS54-203ENST00000409558 UGT1A10Q9HAW8 530 aa14□□□□□ -0.17
VPS54-203ENST00000409558 UGT1A8Q9HAW9 530 aa14□□□□□ -0.17
VPS54-203ENST00000409558 KBTBD13C9JR72 458 aa14□□□□□ -0.17
VPS54-203ENST00000409558 MED7O43513 233 aa14□□□□□ -0.17
VPS54-203ENST00000409558 FAM189A1O60320 539 aa14□□□□□ -0.17
VPS54-203ENST00000409558 CNMDO75829 334 aa14□□□□□ -0.17
VPS54-203ENST00000409558 ZBED1O96006 694 aa14□□□□□ -0.17
VPS54-203ENST00000409558 ARL4CP56559 192 aa14□□□□□ -0.17
VPS54-203ENST00000409558 BCAR1P56945 870 aa14□□□□□ -0.17
VPS54-203ENST00000409558 GPX6P59796 221 aa14□□□□□ -0.17
VPS54-203ENST00000409558 EML3Q32P44 896 aa14□□□□□ -0.17
VPS54-203ENST00000409558 UNC5BQ8IZJ1 945 aa14□□□□□ -0.17
VPS54-203ENST00000409558 PYROXD2Q8N2H3 581 aa14□□□□□ -0.17
VPS54-203ENST00000409558 IQCGQ9H095 443 aaKnown RBP14□□□□□ -0.17
VPS54-203ENST00000409558 NXF3Q9H4D5 531 aaKnown RBP14□□□□□ -0.17
VPS54-203ENST00000409558 ACSS2Q9NR19 701 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms