RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 TMEM209Q96SK2 561 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 PNKPQ96T60 521 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 PKMYT1Q99640 499 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 ACBD6Q9BR61 282 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 CYLDQ9NQC7 956 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 PRDM5Q9NQX1 630 aaPredicted RBP14.8□□□□□ -0.04
GPNMB-203ENST00000409458 MARCH5Q9NX47 278 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 PTPRDP23468 1912 aa14.8□□□□□ -0.04
GPNMB-203ENST00000409458 ARHGEF37A1IGU5 675 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 NRP1O14786 923 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 GRAP2O75791 330 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 LCP1P13796 627 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 SLC11A1P49279 550 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 CACNA2D1P54289 1103 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 BCAR1P56945 870 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 SLC6A3Q01959 620 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 TAF5Q15542 800 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 LONRF2Q1L5Z9 754 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 CC2D1AQ6P1N0 951 aaPredicted RBP14.79□□□□□ -0.04
GPNMB-203ENST00000409458 PIGZQ86VD9 579 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 SCUBE3Q8IX30 993 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 ARFGAP1Q8N6T3 406 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 HSFY1Q96LI6 401 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 TMEM106CQ9BVX2 250 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 MRPL9Q9BYD2 267 aaKnown RBP14.79□□□□□ -0.04
GPNMB-203ENST00000409458 TMLHEQ9NVH6 421 aa14.79□□□□□ -0.04
GPNMB-203ENST00000409458 KIAA0100Q14667 2235 aaKnown RBP14.78□□□□□ -0.04
GPNMB-203ENST00000409458 C2CD4BA6NLJ0 364 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 KRIT1O00522 736 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 AP1G2O75843 785 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 TIMP1P01033 207 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 GPD1P21695 349 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 FLT3P36888 993 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 ACADSBP45954 432 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 RABGGTBP53611 331 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 MAP3K7CLP57077 242 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 SNX16P57768 344 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 MRPS25P82663 173 aaKnown RBP14.78□□□□□ -0.04
GPNMB-203ENST00000409458 YWHAHQ04917 246 aaPredicted RBP14.78□□□□□ -0.04
GPNMB-203ENST00000409458 IKBKEQ14164 716 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 FAM171BQ6P995 826 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 FBXO38Q6PIJ6 1188 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 ZDHHC17Q8IUH5 632 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 KHSRPQ92945 711 aaKnown RBP eCLIP14.78□□□□□ -0.04
GPNMB-203ENST00000409458 SMOQ99835 787 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 PARD6BQ9BYG5 372 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 RHOBTB2Q9BYZ6 727 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 TMEM30AQ9NV96 361 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 ADAM28Q9UKQ2 775 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.78□□□□□ -0.04
GPNMB-203ENST00000409458 NR2E1Q9Y466 385 aa14.78□□□□□ -0.04
GPNMB-203ENST00000409458 KIAA0355O15063 1070 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 LRCH4O75427 683 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 TADA2AO75478 443 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 CAPN15O75808 1086 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 UPP2O95045 317 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 H2AFXP16104 143 aaPredicted RBP14.77□□□□□ -0.04
GPNMB-203ENST00000409458 ZNF143P52747 638 aaPredicted RBP14.77□□□□□ -0.04
GPNMB-203ENST00000409458 SLC8A3P57103 927 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 SLC25A11Q02978 314 aaKnown RBP14.77□□□□□ -0.04
GPNMB-203ENST00000409458 ADIGQ0VDE8 80 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 TXNRD3NBQ6F5E7 133 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 ADAT2Q7Z6V5 191 aaKnown RBP14.77□□□□□ -0.04
GPNMB-203ENST00000409458 LRRTM3Q86VH5 581 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 KLHL7Q8IXQ5 586 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 KATNAL2Q8IYT4 538 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 THEM5Q8N1Q8 247 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 LRRC43Q8N309 656 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 ZMIZ2Q8NF64 920 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 RXFP2Q8WXD0 754 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 KRT12Q99456 494 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 LRRC1Q9BTT6 524 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 KLHL11Q9NVR0 708 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 PATJQ8NI35 1801 aa14.77□□□□□ -0.04
GPNMB-203ENST00000409458 DPYSL4O14531 572 aa14.77□□□□□ -0.05
GPNMB-203ENST00000409458 CSF2RAP15509 400 aa14.77□□□□□ -0.05
GPNMB-203ENST00000409458 PBX3P40426 434 aa14.77□□□□□ -0.05
GPNMB-203ENST00000409458 ADCY1Q08828 1119 aa14.77□□□□□ -0.05
GPNMB-203ENST00000409458 ATP13A4Q4VNC1 1196 aa14.77□□□□□ -0.05
GPNMB-203ENST00000409458 LRRC38Q5VT99 294 aa14.77□□□□□ -0.05
GPNMB-203ENST00000409458 C8orf74Q6P047 294 aa14.77□□□□□ -0.05
GPNMB-203ENST00000409458 SLC13A5Q86YT5 568 aaPredicted RBP14.77□□□□□ -0.05
GPNMB-203ENST00000409458 HDAC7Q8WUI4 952 aa14.77□□□□□ -0.05
GPNMB-203ENST00000409458 KCTD13Q8WZ19 329 aa14.77□□□□□ -0.05
GPNMB-203ENST00000409458 SMARCD1Q96GM5 515 aa14.77□□□□□ -0.05
GPNMB-203ENST00000409458 NAP1L3Q99457 506 aaPredicted RBP14.77□□□□□ -0.05
GPNMB-203ENST00000409458 TCRBV7S2A1N4TA0A589 114 aa14.76□□□□□ -0.05
GPNMB-203ENST00000409458 CCDC188H7C350 402 aa14.76□□□□□ -0.05
GPNMB-203ENST00000409458 TRAPPC3O43617 180 aa14.76□□□□□ -0.05
GPNMB-203ENST00000409458 KRT1P04264 644 aa14.76□□□□□ -0.05
GPNMB-203ENST00000409458 GALTP07902 379 aa14.76□□□□□ -0.05
GPNMB-203ENST00000409458 OR4Q2P0C623 313 aa14.76□□□□□ -0.05
GPNMB-203ENST00000409458 PDGFRAP16234 1089 aa14.76□□□□□ -0.05
GPNMB-203ENST00000409458 IL1R2P27930 398 aa14.76□□□□□ -0.05
GPNMB-203ENST00000409458 SCNN1AP37088 669 aa14.76□□□□□ -0.05
GPNMB-203ENST00000409458 TSPY1Q01534 308 aa14.76□□□□□ -0.05
GPNMB-203ENST00000409458 LLGL1Q15334 1064 aa14.76□□□□□ -0.05
GPNMB-203ENST00000409458 CLUL1Q15846 466 aa14.76□□□□□ -0.05
GPNMB-203ENST00000409458 C15orf59Q2T9L4 293 aaPredicted RBP14.76□□□□□ -0.05
GPNMB-203ENST00000409458 RAB6CQ53S08 254 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms