RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 NR1H3Q13133 447 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 HIF1AQ16665 826 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 PNMA8AQ86V59 439 aaPredicted RBP10.32□□□□□ -0.76
MSH2-202ENST00000406134 FBF1Q8TES7 1133 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 GRAMD1AQ96CP6 724 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 PAFAH2Q99487 392 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 USP29Q9HBJ7 922 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 HOXC10Q9NYD6 342 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.32□□□□□ -0.76
MSH2-202ENST00000406134 C15orf41Q9Y2V0 281 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 DNAJC25-GNG10A0A024R161 153 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 MICAL2O94851 1124 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 ANP32DO95626 131 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 PSMA2P25787 234 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 IL9RQ01113 521 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 IER5Q5VY09 327 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 LVRNQ6Q4G3 990 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 CEP57Q86XR8 500 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 COPS5Q92905 334 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 ERP27Q96DN0 273 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 TLE6Q9H808 572 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 NKIRAS1Q9NYS0 192 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 GGA3Q9NZ52 723 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 SMG5Q9UPR3 1016 aaKnown RBP10.32□□□□□ -0.76
MSH2-202ENST00000406134 MYLKQ15746 1914 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 TRAFD1O14545 582 aaPredicted RBP10.32□□□□□ -0.76
MSH2-202ENST00000406134 PEX11AO75192 247 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 KRT3P12035 628 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 ELF1P32519 619 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 EFNA5P52803 228 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 OSTNP61366 133 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 TFAMQ00059 246 aaKnown RBP10.32□□□□□ -0.76
MSH2-202ENST00000406134 NEDD9Q14511 834 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 EEPD1Q7L9B9 569 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 PRPF39Q86UA1 669 aaKnown RBP10.32□□□□□ -0.76
MSH2-202ENST00000406134 KLHL29Q96CT2 875 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 ARHGEF4Q9NR80 690 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 KLHL14Q9P2G3 628 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 GJD2Q9UKL4 321 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 GJA3Q9Y6H8 435 aa10.32□□□□□ -0.76
MSH2-202ENST00000406134 COL4A4P53420 1690 aaPredicted RBP10.31□□□□□ -0.76
MSH2-202ENST00000406134 E5RJQ4 531 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 ACKR2O00590 384 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 SLC8A1P32418 973 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 DPYSL3Q14195 570 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 DCUN1D2Q6PH85 259 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 MAMDC4Q6UXC1 1216 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 CDHR3Q6ZTQ4 885 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 CENPUQ71F23 418 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 ZNF534Q76KX8 674 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 RHPN2Q8IUC4 686 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 SEPT1Q8WYJ6 367 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 SPATC1LQ9H0A9 340 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 VPS37BQ9H9H4 285 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 SLC5A4Q9NY91 659 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 HAO1Q9UJM8 370 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 APOC4-APOC2K7ER74 178 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 AVILO75366 819 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 CBX6O95503 412 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 APOC2P02655 101 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 SPARCL1Q14515 664 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 PARP6Q2NL67 630 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 CELF3Q5SZQ8 465 aaKnown RBP10.31□□□□□ -0.76
MSH2-202ENST00000406134 JADE1Q6IE81 842 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 THNSL1Q8IYQ7 743 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 FAM71DQ8N9W8 422 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 TCP10LQ8TDR4 215 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 MRRFQ96E11 262 aaKnown RBP10.31□□□□□ -0.76
MSH2-202ENST00000406134 VRTNQ9H8Y1 702 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 SMYD2Q9NRG4 433 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 TTLL3Q9Y4R7 772 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 LACTBL1A8MY62 500 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 CSDE1O75534 798 aaKnown RBP10.31□□□□□ -0.76
MSH2-202ENST00000406134 WFS1O76024 890 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 C22orf31O95567 290 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 IFNB1P01574 187 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 PGK2P07205 417 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 IBSPP21815 317 aaPredicted RBP10.31□□□□□ -0.76
MSH2-202ENST00000406134 YWHAEP62258 255 aaKnown RBP10.31□□□□□ -0.76
MSH2-202ENST00000406134 MYO1EQ12965 1108 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 NOMO1Q15155 1222 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 ATF7IP2Q5U623 682 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 APOBEC3FQ8IUX4 373 aaKnown RBP10.31□□□□□ -0.76
MSH2-202ENST00000406134 TAB3Q8N5C8 712 aaPredicted RBP10.31□□□□□ -0.76
MSH2-202ENST00000406134 PQLC3Q8N755 202 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 NSMCE1Q8WV22 266 aa10.31□□□□□ -0.76
MSH2-202ENST00000406134 PTCD3Q96EY7 689 aaKnown RBP10.31□□□□□ -0.76
MSH2-202ENST00000406134 KLF6Q99612 283 aaPredicted RBP10.31□□□□□ -0.76
MSH2-202ENST00000406134 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.3□□□□□ -0.76
MSH2-202ENST00000406134 TCRBV9S1A1TA0A576 114 aa10.3□□□□□ -0.76
MSH2-202ENST00000406134 HMX2A2RU54 273 aa10.3□□□□□ -0.76
MSH2-202ENST00000406134 C2CD4BA6NLJ0 364 aa10.3□□□□□ -0.76
MSH2-202ENST00000406134 FAM155BO75949 473 aa10.3□□□□□ -0.76
MSH2-202ENST00000406134 CLCN3P51790 818 aa10.3□□□□□ -0.76
MSH2-202ENST00000406134 PSMC1P62191 440 aaKnown RBP10.3□□□□□ -0.76
MSH2-202ENST00000406134 SLC18A2Q05940 514 aa10.3□□□□□ -0.76
MSH2-202ENST00000406134 C15orf59Q2T9L4 293 aaPredicted RBP10.3□□□□□ -0.76
MSH2-202ENST00000406134 Q3C1V9 767 aa10.3□□□□□ -0.76
MSH2-202ENST00000406134 PKDCCQ504Y2 493 aa10.3□□□□□ -0.76
MSH2-202ENST00000406134 SPDYAQ5MJ70 313 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms