RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 CCDC192P0DO97 292 aa30.47■■■□□ 2.47
HMGB1-205ENST00000399494 PCSK1P29120 753 aa30.47■■■□□ 2.47
HMGB1-205ENST00000399494 LIMK1P53667 647 aa30.47■■■□□ 2.47
HMGB1-205ENST00000399494 FBXO43Q4G163 708 aa30.47■■■□□ 2.47
HMGB1-205ENST00000399494 DPH6Q7L8W6 267 aa30.47■■■□□ 2.47
HMGB1-205ENST00000399494 SCN4BQ8IWT1 228 aa30.47■■■□□ 2.47
HMGB1-205ENST00000399494 NELFCDQ8IXH7 590 aa30.47■■■□□ 2.47
HMGB1-205ENST00000399494 CPA6Q8N4T0 437 aa30.47■■■□□ 2.47
HMGB1-205ENST00000399494 EZH1Q92800 747 aaPredicted RBP30.47■■■□□ 2.47
HMGB1-205ENST00000399494 KMT2BQ9UMN6 2715 aaPredicted RBP30.47■■■□□ 2.47
HMGB1-205ENST00000399494 TRAV19A0A0A6YYK7 116 aa30.46■■■□□ 2.47
HMGB1-205ENST00000399494 TM4SF5O14894 197 aa30.46■■■□□ 2.47
HMGB1-205ENST00000399494 ATP2C2O75185 946 aa30.46■■■□□ 2.47
HMGB1-205ENST00000399494 KRT37O76014 449 aa30.46■■■□□ 2.47
HMGB1-205ENST00000399494 TMEM191BP0C7N4 346 aa30.46■■■□□ 2.47
HMGB1-205ENST00000399494 DPYDQ12882 1025 aa30.46■■■□□ 2.47
HMGB1-205ENST00000399494 AASDHQ4L235 1098 aaPredicted RBP30.46■■■□□ 2.47
HMGB1-205ENST00000399494 GPD1LQ8N335 351 aa30.46■■■□□ 2.47
HMGB1-205ENST00000399494 ARL14EPQ8N8R7 260 aaPredicted RBP30.46■■■□□ 2.47
HMGB1-205ENST00000399494 SCFD1Q8WVM8 642 aa30.46■■■□□ 2.47
HMGB1-205ENST00000399494 EXOC4Q96A65 974 aa30.46■■■□□ 2.47
HMGB1-205ENST00000399494 RXFP3Q9NSD7 469 aa30.46■■■□□ 2.47
HMGB1-205ENST00000399494 INTS13Q9NVM9 706 aa30.46■■■□□ 2.47
HMGB1-205ENST00000399494 SDK1Q7Z5N4 2213 aa30.45■■■□□ 2.47
HMGB1-205ENST00000399494 LMO2P25791 158 aa30.45■■■□□ 2.47
HMGB1-205ENST00000399494 MAGEA11P43364 429 aa30.45■■■□□ 2.47
HMGB1-205ENST00000399494 USP4Q13107 963 aa30.45■■■□□ 2.47
HMGB1-205ENST00000399494 EML3Q32P44 896 aa30.45■■■□□ 2.47
HMGB1-205ENST00000399494 PLA2G2CQ5R387 149 aa30.45■■■□□ 2.47
HMGB1-205ENST00000399494 LMBRD2Q68DH5 695 aaPredicted RBP30.45■■■□□ 2.47
HMGB1-205ENST00000399494 ENGASEQ8NFI3 743 aa30.45■■■□□ 2.47
HMGB1-205ENST00000399494 DDX1Q92499 740 aaKnown RBP30.45■■■□□ 2.47
HMGB1-205ENST00000399494 CD101Q93033 1021 aa30.45■■■□□ 2.47
HMGB1-205ENST00000399494 IPO9Q96P70 1041 aaKnown RBP30.45■■■□□ 2.47
HMGB1-205ENST00000399494 WNT6Q9Y6F9 365 aa30.45■■■□□ 2.47
HMGB1-205ENST00000399494 GREB1Q4ZG55 1949 aa30.45■■■□□ 2.46
HMGB1-205ENST00000399494 C2orf78A6NCI8 922 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 CKMP06732 381 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 HOXD13P35453 343 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 MYO1EQ12965 1108 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 IL31Q6EBC2 164 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 SYT13Q7L8C5 426 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 HS2ST1Q7LGA3 356 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 C12orf50Q8NA57 414 aaPredicted RBP30.44■■■□□ 2.46
HMGB1-205ENST00000399494 TTC16Q8NEE8 873 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 OR5B17Q8NGF7 314 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 RPLP0P6Q8NHW5 317 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 KBTBD7Q8WVZ9 684 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 ATP2A3Q93084 1043 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 HPDLQ96IR7 371 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 ANKRD36BP1Q96IX9 119 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 HHIPQ96QV1 700 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 LINC00597Q9H2U6 94 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 HOOK1Q9UJC3 728 aaKnown RBP30.44■■■□□ 2.46
HMGB1-205ENST00000399494 PTPRJQ12913 1337 aa30.44■■■□□ 2.46
HMGB1-205ENST00000399494 KIAA0391O15091 583 aaKnown RBP30.43■■■□□ 2.46
HMGB1-205ENST00000399494 IFNAR2P48551 515 aa30.43■■■□□ 2.46
HMGB1-205ENST00000399494 STK4Q13043 487 aa30.43■■■□□ 2.46
HMGB1-205ENST00000399494 PLK5Q496M5 336 aa30.43■■■□□ 2.46
HMGB1-205ENST00000399494 SH3RF2Q8TEC5 729 aa30.43■■■□□ 2.46
HMGB1-205ENST00000399494 CRTAC1Q9NQ79 661 aa30.43■■■□□ 2.46
HMGB1-205ENST00000399494 MAGEC2Q9UBF1 373 aaPredicted RBP30.43■■■□□ 2.46
HMGB1-205ENST00000399494 PCDHGA5Q9Y5G8 931 aa30.43■■■□□ 2.46
HMGB1-205ENST00000399494 EML5Q05BV3 1969 aa30.43■■■□□ 2.46
HMGB1-205ENST00000399494 CACNA1BQ00975 2339 aa30.42■■■□□ 2.46
HMGB1-205ENST00000399494 GADD45BO75293 160 aaPredicted RBP30.42■■■□□ 2.46
HMGB1-205ENST00000399494 TCF3P15923 654 aa30.42■■■□□ 2.46
HMGB1-205ENST00000399494 HDCP19113 662 aa30.42■■■□□ 2.46
HMGB1-205ENST00000399494 BMT2Q1RMZ1 405 aa30.42■■■□□ 2.46
HMGB1-205ENST00000399494 C4orf50Q6ZRC1 276 aa30.42■■■□□ 2.46
HMGB1-205ENST00000399494 KIAA0895Q8NCT3 520 aa30.42■■■□□ 2.46
HMGB1-205ENST00000399494 SPATA17Q96L03 361 aa30.42■■■□□ 2.46
HMGB1-205ENST00000399494 SYT15Q9BQS2 421 aa30.42■■■□□ 2.46
HMGB1-205ENST00000399494 DUSP15Q9H1R2 295 aaPredicted RBP30.42■■■□□ 2.46
HMGB1-205ENST00000399494 EBF1Q9UH73 591 aa30.42■■■□□ 2.46
HMGB1-205ENST00000399494 CDH9Q9ULB4 789 aa30.42■■■□□ 2.46
HMGB1-205ENST00000399494 SPAG17Q6Q759 2223 aa30.42■■■□□ 2.46
HMGB1-205ENST00000399494 ZNF233A6NK53 670 aa30.41■■■□□ 2.46
HMGB1-205ENST00000399494 NR1H3Q13133 447 aa30.41■■■□□ 2.46
HMGB1-205ENST00000399494 PNOCQ13519 176 aa30.41■■■□□ 2.46
HMGB1-205ENST00000399494 KNOP1Q1ED39 458 aaKnown RBP30.41■■■□□ 2.46
HMGB1-205ENST00000399494 DUOXA2Q1HG44 320 aa30.41■■■□□ 2.46
HMGB1-205ENST00000399494 VSTM1Q6UX27 236 aa30.41■■■□□ 2.46
HMGB1-205ENST00000399494 TIGD1Q96MW7 591 aa30.41■■■□□ 2.46
HMGB1-205ENST00000399494 SMOC1Q9H4F8 434 aa30.41■■■□□ 2.46
HMGB1-205ENST00000399494 AGPAT3Q9NRZ7 376 aa30.41■■■□□ 2.46
HMGB1-205ENST00000399494 R3HCC1Q9Y3T6 440 aaKnown RBP30.41■■■□□ 2.46
HMGB1-205ENST00000399494 ANAPC1Q9H1A4 1944 aa30.41■■■□□ 2.46
HMGB1-205ENST00000399494 RHOBTB3O94955 611 aa30.4■■■□□ 2.46
HMGB1-205ENST00000399494 KIF20AO95235 890 aa30.4■■■□□ 2.46
HMGB1-205ENST00000399494 TNNC2P02585 160 aa30.4■■■□□ 2.46
HMGB1-205ENST00000399494 BDNFP23560 247 aa30.4■■■□□ 2.46
HMGB1-205ENST00000399494 PSMC1P62191 440 aaKnown RBP30.4■■■□□ 2.46
HMGB1-205ENST00000399494 SNRPFP62306 86 aaKnown RBP30.4■■■□□ 2.46
HMGB1-205ENST00000399494 ZXDBP98169 803 aa30.4■■■□□ 2.46
HMGB1-205ENST00000399494 DMC1Q14565 340 aa30.4■■■□□ 2.46
HMGB1-205ENST00000399494 SURF1Q15526 300 aa30.4■■■□□ 2.46
HMGB1-205ENST00000399494 CBWD2Q8IUF1 395 aa30.4■■■□□ 2.46
HMGB1-205ENST00000399494 MYLPFQ96A32 169 aa30.4■■■□□ 2.46
HMGB1-205ENST00000399494 HSPBP1Q9NZL4 362 aa30.4■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms