RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 WDR35Q9P2L0 1181 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 ADD3Q9UEY8 706 aaKnown RBP4.56□□□□□ -1.68
HMGB1-204ENST00000399489 MAN2B2Q9Y2E5 1009 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 TDRD9Q8NDG6 1382 aaKnown RBP4.56□□□□□ -1.68
HMGB1-204ENST00000399489 PRSS38A1L453 326 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 PI4K2BG5E9Z4 385 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 PODXLO00592 558 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 FSBPO95073 299 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 TGDSO95455 350 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 MLYCDO95822 493 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 PEX11BO96011 259 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 RARBP10826 455 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 NPR1P16066 1061 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 CST5P28325 142 aaPredicted RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 ATP6V1E1P36543 226 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 PEX19P40855 299 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 HK3P52790 923 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 NKX6-1P78426 367 aaPredicted RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 ROM1Q03395 351 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 HGFACQ04756 655 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 CALD1Q05682 793 aaKnown RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 ACVR2BQ13705 512 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 RAB30Q15771 203 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 SLC9C2Q5TAH2 1124 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 KAZNQ674X7 775 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 ACAD10Q6JQN1 1059 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 UNC5DQ6UXZ4 953 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 ESPNLQ6ZVH7 1005 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 DNAJB7Q7Z6W7 309 aaPredicted RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 CHD1LQ86WJ1 897 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 ANKRD13BQ86YJ7 626 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 TMPRSS6Q8IU80 811 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 GPR135Q8IZ08 494 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 HDAC10Q969S8 669 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 TRIM44Q96DX7 344 aaPredicted RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 IQCDQ96DY2 449 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 CNDP2Q96KP4 475 aaKnown RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 YME1L1Q96TA2 773 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 FOXB1Q99853 325 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 SIL1Q9H173 461 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 WNT8AQ9H1J5 351 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 SLC6A15Q9H2J7 730 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 PRDM13Q9H4Q3 707 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 ZNF703Q9H7S9 590 aaPredicted RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 TM7SF3Q9NS93 570 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 TMOD4Q9NZQ9 345 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 COL20A1Q9P218 1284 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 AFF4Q9UHB7 1163 aaKnown RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 HERC5Q9UII4 1024 aaKnown RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 TMPRSS11EQ9UL52 423 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 PCDHB1Q9Y5F3 818 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 SYNRGQ9UMZ2 1314 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 A0A087X1B8 175 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 LRRC14BA6NHZ5 514 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 ELL2O00472 640 aaPredicted RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 PPFIA2O75334 1257 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 PGM3O95394 542 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 HNRNPA1P09651 372 aaKnown RBP eCLIP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 MAPK4P31152 587 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 HPDP32754 393 aaPredicted RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 CCR9P51686 369 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 SUMO3P55854 103 aaPredicted RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 LGALS4P56470 323 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 CCT2P78371 535 aaKnown RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 CHRNDQ07001 517 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 ADAM15Q13444 863 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 TRIM25Q14258 630 aaKnown RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 PLS1Q14651 629 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 ATP2B3Q16720 1220 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 ZNF362Q5T0B9 420 aaPredicted RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 SNX30Q5VWJ9 437 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 TATDN1Q6P1N9 297 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 BEND5Q7L4P6 421 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 LYSMD2Q8IV50 215 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 GSPT2Q8IYD1 628 aaKnown RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 NGEFQ8N5V2 710 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 LSM14AQ8ND56 463 aaKnown RBP4.55□□□□□ -1.68
HMGB1-204ENST00000399489 CENPTQ96BT3 561 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 GDF15Q99988 308 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 EDEM3Q9BZQ6 932 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 GRPEL1Q9HAV7 217 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 PCDHGB5Q9Y5G0 923 aa4.55□□□□□ -1.68
HMGB1-204ENST00000399489 hCG_1807616A0A1W2PRN6 198 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 KRTAP23-1A1A580 65 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 PLSCR1O15162 318 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 SLC7A4O43246 635 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 ASNA1O43681 348 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 SCGB1D1O95968 90 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 CSF1P09603 554 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 EN2P19622 333 aaPredicted RBP4.54□□□□□ -1.68
HMGB1-204ENST00000399489 FNTBP49356 437 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 CLCN2P51788 898 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 ZNF132P52740 706 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 PNLIPRP1P54315 467 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 IFI35P80217 286 aaPredicted RBP4.54□□□□□ -1.68
HMGB1-204ENST00000399489 CDK17Q00537 523 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 ADRM1Q16186 407 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 DGKDQ16760 1214 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 CATSPEREQ5SY80 951 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 MAP3K21Q5TCX8 1036 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms