RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 CEP78Q5JTW2 689 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 PPM1LQ5SGD2 360 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 AGAP9Q5VTM2 703 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 TMEM159Q96B96 161 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 REEP2Q9BRK0 252 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 ADGRE3Q9BY15 652 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 PRRG3Q9BZD7 231 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 MIR1-1HGQ9H1L0 117 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 ACTR8Q9H981 624 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 NEUROD4Q9HD90 331 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 GRID1Q9ULK0 1009 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 RNF112Q9ULX5 631 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 NEU2Q9Y3R4 380 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 SPATA31A6Q5VVP1 1343 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 A0A087X0T9 212 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 MANSC4A6NHS7 340 aaPredicted RBP7.45□□□□□ -1.22
UPF2-203ENST00000397053 OR6A2O95222 327 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 LARGE1O95461 756 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 AMD1P17707 334 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 TGM2P21980 687 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 MUTP22033 750 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 FGFR4P22455 802 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 NPY2RP49146 381 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 ALDH9A1P49189 494 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 CUL4AQ13619 759 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 STYK1Q6J9G0 422 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 C4orf22Q6V702 233 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 CYP4Z1Q86W10 505 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 KAT2BQ92831 832 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 MTERF3Q96E29 417 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 PNMA5Q96PV4 448 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 HTATIP2Q9BUP3 242 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 ELOVL6Q9H5J4 265 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 ARHGEF3Q9NR81 526 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 KCNH7Q9NS40 1196 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 COQ6Q9Y2Z9 468 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 ADGRL3Q9HAR2 1447 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 NPHP3-ACAD11A0A0J9YXS1 232 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 OGTO15294 1046 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 EXTL3O43909 919 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 IFNA14P01570 189 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 CNPP09543 421 aaKnown RBP7.45□□□□□ -1.22
UPF2-203ENST00000397053 PCNAP12004 261 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 SCNN1BP51168 640 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 CCR4P51679 360 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 XRCC4Q13426 336 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 VPS72Q15906 364 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 MDH1BQ5I0G3 518 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 ATAD3BQ5T9A4 648 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 OTOAQ7RTW8 1153 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 HOMEZQ8IX15 550 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 COLGALT2Q8IYK4 626 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 NBPF15Q8N660 670 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 GPRASP2Q96D09 838 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 RMND5AQ9H871 391 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 ANAPC2Q9UJX6 822 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 CDY2AQ9Y6F7 541 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 CDY1Q9Y6F8 540 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 TK2O00142 265 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 SMAPO00193 183 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 CRTAMO95727 393 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 TIGD7Q6NT04 549 aaPredicted RBP7.45□□□□□ -1.22
UPF2-203ENST00000397053 CYP4X1Q8N118 509 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 MOSPD2Q8NHP6 518 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 DTX3LQ8TDB6 740 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 MAGED4Q96JG8 741 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 TAAR1Q96RJ0 339 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 TRIM9Q9C026 710 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 TMEM8AQ9HCN3 771 aa7.45□□□□□ -1.22
UPF2-203ENST00000397053 METTL5Q9NRN9 209 aaKnown RBP7.45□□□□□ -1.22
UPF2-203ENST00000397053 PDS5AQ29RF7 1337 aaKnown RBP7.45□□□□□ -1.22
UPF2-203ENST00000397053 PEX1O43933 1283 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 CAPN1P07384 714 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 MSH3P20585 1137 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 KLRC1P26715 233 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 FLT3P36888 993 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 GALCP54803 685 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 PTK7Q13308 1070 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 BIKQ13323 160 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 SETD3Q86TU7 594 aaPredicted RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 ACOT1Q86TX2 421 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 C4orf33Q8N1A6 199 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 RDM1Q8NG50 284 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 TFB1MQ8WVM0 346 aaKnown RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 FAM136AQ96C01 138 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 S100A13Q99584 98 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 ISCA1Q9BUE6 129 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 CCDC134Q9H6E4 229 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.44□□□□□ -1.22
UPF2-203ENST00000397053 SIK3Q9Y2K2 1263 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 AAR2Q9Y312 384 aaKnown RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 MRFAP1Q9Y605 127 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 RPS6KL1Q9Y6S9 549 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 WDR19Q8NEZ3 1342 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 PZPP20742 1482 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 ZFYVE16Q7Z3T8 1539 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 LOC100653049A0A140TA62 436 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 NCF1BA6NI72 391 aaPredicted RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 NCF1CA8MVU1 366 aaPredicted RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 RGS5O15539 181 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms