RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 ACO2Q99798 780 aaKnown RBP21.59■■□□□ 1.05
CLK3-202ENST00000395066 DOCK1Q14185 1865 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 C2orf71A6NGG8 1288 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 AVILO75366 819 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 CSDE1O75534 798 aaKnown RBP21.59■■□□□ 1.05
CLK3-202ENST00000395066 MAP3K6O95382 1288 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 PRKCBP05771 671 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 EIF4BP23588 611 aaKnown RBP21.59■■□□□ 1.05
CLK3-202ENST00000395066 OAZ1P54368 228 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 WASHC2DQ5SRD0 308 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 DLK2Q6UY11 383 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 ATP11CQ8NB49 1132 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 PRR11Q96HE9 360 aaPredicted RBP21.59■■□□□ 1.05
CLK3-202ENST00000395066 MRPL4Q9BYD3 311 aaKnown RBP21.59■■□□□ 1.05
CLK3-202ENST00000395066 SYNCQ9H7C4 482 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 SENP1Q9P0U3 644 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 KANSL3Q9P2N6 904 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 MGAMO43451 1857 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 PTPN7P35236 360 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 PCK1P35558 622 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 GCLCP48506 637 aaPredicted RBP21.59■■□□□ 1.05
CLK3-202ENST00000395066 LAMTOR4Q0VGL1 99 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 SEPT7Q16181 437 aaKnown RBP21.59■■□□□ 1.05
CLK3-202ENST00000395066 ANO7Q6IWH7 933 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 NIPA2Q8N8Q9 360 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 KCTD6Q8NC69 237 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 TTC8Q8TAM2 541 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 MZB1Q8WU39 189 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 YIPF3Q9GZM5 350 aa21.59■■□□□ 1.05
CLK3-202ENST00000395066 ATP6V1C1P21283 382 aa21.58■■□□□ 1.05
CLK3-202ENST00000395066 EEF1DP3Q658K8 133 aa21.58■■□□□ 1.05
CLK3-202ENST00000395066 LRRC6Q86X45 466 aa21.58■■□□□ 1.05
CLK3-202ENST00000395066 ZNF276Q8N554 614 aa21.58■■□□□ 1.05
CLK3-202ENST00000395066 DCAKDQ8WVC6 231 aa21.58■■□□□ 1.05
CLK3-202ENST00000395066 PPP1R16BQ96T49 567 aa21.58■■□□□ 1.05
CLK3-202ENST00000395066 SDCBP2Q9H190 292 aa21.58■■□□□ 1.05
CLK3-202ENST00000395066 CYLDQ9NQC7 956 aa21.58■■□□□ 1.05
CLK3-202ENST00000395066 SPATS2LQ9NUQ6 558 aaKnown RBP21.58■■□□□ 1.05
CLK3-202ENST00000395066 KCNG1Q9UIX4 513 aa21.58■■□□□ 1.05
CLK3-202ENST00000395066 CPSF3Q9UKF6 684 aaKnown RBP21.58■■□□□ 1.05
CLK3-202ENST00000395066 IGKV6D-21A0A0A0MT36 114 aa21.58■■□□□ 1.04
CLK3-202ENST00000395066 A0A0G2JND7 137 aa21.58■■□□□ 1.04
CLK3-202ENST00000395066 TRAFD1O14545 582 aaPredicted RBP21.58■■□□□ 1.04
CLK3-202ENST00000395066 ABLIM1O14639 778 aa21.58■■□□□ 1.04
CLK3-202ENST00000395066 OGTO15294 1046 aa21.58■■□□□ 1.04
CLK3-202ENST00000395066 EIF3EP60228 445 aaKnown RBP21.58■■□□□ 1.04
CLK3-202ENST00000395066 TMEM132AQ24JP5 1023 aa21.58■■□□□ 1.04
CLK3-202ENST00000395066 LMNTD2Q8IXW0 634 aa21.58■■□□□ 1.04
CLK3-202ENST00000395066 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP21.58■■□□□ 1.04
CLK3-202ENST00000395066 NLRP4Q96MN2 994 aa21.58■■□□□ 1.04
CLK3-202ENST00000395066 ASCC2Q9H1I8 757 aaPredicted RBP21.58■■□□□ 1.04
CLK3-202ENST00000395066 ZFP69BQ9UJL9 534 aa21.58■■□□□ 1.04
CLK3-202ENST00000395066 CXCL8P10145 99 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 MIPP30301 263 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 CDH5P33151 784 aaPredicted RBP21.57■■□□□ 1.04
CLK3-202ENST00000395066 SPDYAQ5MJ70 313 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 ANGEL2Q5VTE6 544 aaKnown RBP21.57■■□□□ 1.04
CLK3-202ENST00000395066 PPP1R2P3Q6NXS1 205 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 ADGRD1Q6QNK2 874 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 ZPBP2Q6X784 338 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 BBS12Q6ZW61 710 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 DENND2DQ9H6A0 471 aaPredicted RBP21.57■■□□□ 1.04
CLK3-202ENST00000395066 ACSS3Q9H6R3 686 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 SMYD3Q9H7B4 428 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 NRBP2Q9NSY0 501 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 PCDHGC3Q9UN70 934 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.57■■□□□ 1.04
CLK3-202ENST00000395066 SIGLEC16A6NMB1 481 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 ENTPD5O75356 428 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 MAFO75444 373 aaPredicted RBP21.57■■□□□ 1.04
CLK3-202ENST00000395066 FAM155BO75949 473 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 ELK3P41970 407 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 PTDSS1P48651 473 aaKnown RBP21.57■■□□□ 1.04
CLK3-202ENST00000395066 CMPK2Q5EBM0 449 aa21.57■■□□□ 1.04
CLK3-202ENST00000395066 ENO4A6NNW6 628 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 RBP3P10745 1247 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 PTPN4P29074 926 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 PHBP35232 272 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 RFC5P40937 340 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 SLC45A4Q5BKX6 768 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 DCAF15Q66K64 600 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 XYLT1Q86Y38 959 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 SH3TC2Q8TF17 1288 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 SERAC1Q96JX3 654 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 PEBP4Q96S96 227 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 GRAP2O75791 330 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 ICAM3P32942 547 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 TREML2Q5T2D2 321 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 FAXCQ5TGI0 409 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 POLNQ7Z5Q5 900 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 SPATA18Q8TC71 538 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 FBXO41Q8TF61 875 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 PIWIL1Q96J94 861 aaKnown RBP21.56■■□□□ 1.04
CLK3-202ENST00000395066 ZNF518BQ9C0D4 1074 aa21.56■■□□□ 1.04
CLK3-202ENST00000395066 RPL26L1Q9UNX3 145 aaKnown RBP21.56■■□□□ 1.04
CLK3-202ENST00000395066 TNS1Q9HBL0 1735 aaKnown RBP21.55■■□□□ 1.04
CLK3-202ENST00000395066 DPPA5A6NC42 116 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 INO80B-WBP1J3KQ70 363 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 NFKBIEO00221 500 aa21.55■■□□□ 1.04
CLK3-202ENST00000395066 ZWINTO95229 277 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms