RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 SPDYE1Q8NFV5 336 aaPredicted RBP16.83■□□□□ 0.28
PCDH1-203ENST00000394536 JOSD2Q8TAC2 188 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 MAGEC3Q8TD91 643 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 SYT11Q9BT88 431 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 MECRQ9BV79 373 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 DNAI2Q9GZS0 605 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 CCDC88AQ3V6T2 1871 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 APOL1O14791 398 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 OGTO15294 1046 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 ALOX15BO15296 676 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 CREB3O43889 395 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 TRPA1O75762 1119 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 CLCN3P51790 818 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 AP2B1P63010 937 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 MRPS35P82673 323 aaKnown RBP16.83■□□□□ 0.28
PCDH1-203ENST00000394536 RASSF3Q86WH2 238 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 SAMD3Q8N6K7 520 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 RDM1Q8NG50 284 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 SEPT1Q8WYJ6 367 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 FAM49AQ9H0Q0 323 aaPredicted RBP16.83■□□□□ 0.28
PCDH1-203ENST00000394536 ARHGEF3Q9NR81 526 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 CSADQ9Y600 493 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 ACTL7BQ9Y614 415 aa16.83■□□□□ 0.28
PCDH1-203ENST00000394536 hCG_1818297A0A087WSY0 165 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 TMEM191CA6NGB0 347 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 CXCL8P10145 99 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 SNX16P57768 344 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 BIRC2Q13490 618 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 ATF7IP2Q5U623 682 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 MICALL2Q8IY33 904 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 POU5F2Q8N7G0 328 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 PIP4K2CQ8TBX8 421 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 CLEC4DQ8WXI8 215 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 BTBD10Q9BSF8 475 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 DENND2DQ9H6A0 471 aaPredicted RBP16.82■□□□□ 0.28
PCDH1-203ENST00000394536 COQ4Q9Y3A0 265 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 SNX9Q9Y5X1 595 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 ASMTLO95671 621 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 MMP8P22894 467 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 ADORA2BP29275 332 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 AP1B1Q10567 949 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 KCTD2Q14681 263 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 SIX1Q15475 284 aaPredicted RBP16.82■□□□□ 0.28
PCDH1-203ENST00000394536 RAB3IL1Q8TBN0 382 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 CLMNQ96JQ2 1002 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 SRPK1Q96SB4 655 aaKnown RBP16.82■□□□□ 0.28
PCDH1-203ENST00000394536 PLCH1Q4KWH8 1693 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 CD48P09326 243 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 RFC5P40937 340 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 GEN1Q17RS7 908 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 SLC45A4Q5BKX6 768 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 SLC39A4Q6P5W5 647 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 ISLR2Q6UXK2 745 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 RXFP2Q8WXD0 754 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 SCG3Q8WXD2 468 aaKnown RBP16.82■□□□□ 0.28
PCDH1-203ENST00000394536 SPATA33Q96N06 139 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 XPNPEP1Q9NQW7 623 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 RNF19AQ9NV58 838 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 ARL8BQ9NVJ2 186 aa16.82■□□□□ 0.28
PCDH1-203ENST00000394536 NKX1-2Q9UD57 310 aaPredicted RBP16.82■□□□□ 0.28
PCDH1-203ENST00000394536 FAM155BO75949 473 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 HSPA4LO95757 839 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 GJB1P08034 283 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 PDGFRBP09619 1106 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 LCP1P13796 627 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 C15orf59Q2T9L4 293 aaPredicted RBP16.81■□□□□ 0.28
PCDH1-203ENST00000394536 CEP41Q9BYV8 373 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 CCDC134Q9H6E4 229 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 STIP1P31948 543 aaKnown RBP16.81■□□□□ 0.28
PCDH1-203ENST00000394536 PTGER2P43116 358 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 AP3M2P53677 418 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 BACE1P56817 501 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 EN1Q05925 392 aaPredicted RBP16.81■□□□□ 0.28
PCDH1-203ENST00000394536 IFRD2Q12894 506 aaPredicted RBP16.81■□□□□ 0.28
PCDH1-203ENST00000394536 AMHR2Q16671 573 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 FNBP1LQ5T0N5 605 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 PLEKHA7Q6IQ23 1121 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.81■□□□□ 0.28
PCDH1-203ENST00000394536 CLNKQ7Z7G1 428 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 DDX1Q92499 740 aaKnown RBP16.81■□□□□ 0.28
PCDH1-203ENST00000394536 FGD4Q96M96 766 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 NENFQ9UMX5 172 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 KDELR1P24390 212 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 DPYSL3Q14195 570 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 HIC1Q14526 733 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 TTC39BQ5VTQ0 682 aaPredicted RBP16.81■□□□□ 0.28
PCDH1-203ENST00000394536 PHF13Q86YI8 300 aaPredicted RBP16.81■□□□□ 0.28
PCDH1-203ENST00000394536 DDX50Q9BQ39 737 aaKnown RBP16.81■□□□□ 0.28
PCDH1-203ENST00000394536 PPCSQ9HAB8 311 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 A0A1B0GUL6 1792 aa16.81■□□□□ 0.28
PCDH1-203ENST00000394536 LRP5O75197 1615 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 C4BPAP04003 597 aaKnown RBP16.8■□□□□ 0.28
PCDH1-203ENST00000394536 GDF10P55107 478 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 ASPHQ12797 758 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 THEMIS2Q5TEJ8 643 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 SLC26A11Q86WA9 606 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 MED10Q9BTT4 135 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 PAK5Q9P286 719 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 WDR35Q9P2L0 1181 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 INPP5FQ9Y2H2 1132 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms