RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 MAGEB5Q9BZ81 275 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 HOMER3Q9NSC5 361 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 hCG_1818297A0A087WSY0 165 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 MANSC4A6NHS7 340 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-203ENST00000394269 F5H423 210 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-203ENST00000394269 IVLP07476 585 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 KRT7P08729 469 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 CDKN2BP42772 138 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 PPP2R2AP63151 447 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 SOX4Q06945 474 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-203ENST00000394269 LRRC14Q15048 493 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 C9orf57Q5W0N0 161 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 ARFGAP2Q8N6H7 521 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 ANKRD42Q8N9B4 389 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 C12orf50Q8NA57 414 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-203ENST00000394269 ARRDC4Q8NCT1 418 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 SNX27Q96L92 541 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 VPS37BQ9H9H4 285 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 ASNSD1Q9NWL6 643 aa11.69□□□□□ -0.54
TCOF1-203ENST00000394269 SMIM35A0A1B0GVV1 85 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 TCRBV5S1A1TA0A578 114 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 KPNA7A9QM74 516 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 POC1B-GALNT4F8VUJ3 575 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 M0QZ92 97 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 CLDN5O00501 218 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 TRPA1O75762 1119 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 KDELR1P24390 212 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 MAN1A1P33908 653 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 TAP1Q03518 808 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 ZNF268Q14587 947 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-203ENST00000394269 KYAT1Q16773 422 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 ZC3H12AQ5D1E8 599 aaKnown RBP11.68□□□□□ -0.54
TCOF1-203ENST00000394269 PPP1R15BQ5SWA1 713 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 KDM7AQ6ZMT4 941 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 ZNF784Q8NCA9 323 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-203ENST00000394269 SLC2A14Q8TDB8 520 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 AAASQ9NRG9 546 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 LCMT1Q9UIC8 334 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 GABRQQ9UN88 632 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 IPPQ9Y573 584 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 LOC285556D6RIA3 1793 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 HUS1O60921 280 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 TFE3P19532 575 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-203ENST00000394269 GPD1P21695 349 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 GDF10P55107 478 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 BASP1P80723 227 aaKnown RBP11.68□□□□□ -0.54
TCOF1-203ENST00000394269 PTK6Q13882 451 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 NBPF20Q3BBV1 942 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 APPL2Q8NEU8 664 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 WHRNQ9P202 907 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 NEU2Q9Y3R4 380 aa11.68□□□□□ -0.54
TCOF1-203ENST00000394269 BHMG1C9JSJ3 638 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-203ENST00000394269 H7C0C1 242 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 EBAG9O00559 213 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 IVDP26440 423 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 CTGFP29279 349 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 SDC4P31431 198 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 GBP1P32455 592 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 ATP5OP48047 213 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 FLT3LGP49771 235 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 EIF3BP55884 814 aaKnown RBP11.67□□□□□ -0.54
TCOF1-203ENST00000394269 GAD2Q05329 585 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 ZBED8Q8IZ13 594 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 SPATA18Q8TC71 538 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 HASPINQ8TF76 798 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 FAM172AQ8WUF8 416 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 DYDC1Q8WWB3 177 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 GAD1Q99259 594 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 PAIP2Q9BPZ3 127 aaKnown RBP11.67□□□□□ -0.54
TCOF1-203ENST00000394269 MED10Q9BTT4 135 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 TMEM51Q9NW97 253 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 DDX56Q9NY93 547 aaKnown RBP11.67□□□□□ -0.54
TCOF1-203ENST00000394269 WDR35Q9P2L0 1181 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 UBQLN1Q9UMX0 589 aaKnown RBP11.67□□□□□ -0.54
TCOF1-203ENST00000394269 INPP5FQ9Y2H2 1132 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 NME7Q9Y5B8 376 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 UNCXA6NJT0 531 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 I3L4J1 428 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 AOC2O75106 756 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 RPS6KA5O75582 802 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 FGFR1P11362 822 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 CREB1P16220 341 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 CDH5P33151 784 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-203ENST00000394269 FASTKD3Q14CZ7 662 aaKnown RBP11.67□□□□□ -0.54
TCOF1-203ENST00000394269 DARS2Q6PI48 645 aaKnown RBP11.67□□□□□ -0.54
TCOF1-203ENST00000394269 C17orf99Q6UX52 265 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 NOD1Q9Y239 953 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 A0A0G2JMZ2 1700 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 TP73O15350 636 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 RBP3P10745 1247 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 ELNP15502 786 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 PECAM1P16284 738 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-203ENST00000394269 MLH1P40692 756 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 EIF3EP60228 445 aaKnown RBP11.67□□□□□ -0.54
TCOF1-203ENST00000394269 SLC25A11Q02978 314 aaKnown RBP11.67□□□□□ -0.54
TCOF1-203ENST00000394269 TRNP1Q6NT89 227 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 LCLAT1Q6UWP7 414 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 C10orf67Q8IYJ2 551 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 PEBP4Q96S96 227 aa11.67□□□□□ -0.54
TCOF1-203ENST00000394269 TXLNGYQ9BZA5 131 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms