RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TBC1D13Q9NVG8 400 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 TBX21Q9UL17 535 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 PCDHB8Q9UN66 801 aa19.14■□□□□ 0.66
CCDC88C-203ENST00000389856 ERBB2P04626 1255 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 ACTN2P35609 894 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 LBX1P52954 281 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 PLCB3Q01970 1234 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 FAM102AQ5T9C2 384 aaPredicted RBP19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 LRRC38Q5VT99 294 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 OR6B2Q6IFH4 312 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 CNKSR3Q6P9H4 555 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 NECAB2Q7Z6G3 386 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 TMEM110Q86TL2 294 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 TTC30AQ86WT1 665 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 C3orf58Q8NDZ4 430 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 FAM76AQ8TAV0 307 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 SLC35F5Q8WV83 523 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 CASKIN2Q8WXE0 1202 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 LRRC45Q96CN5 670 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 ACBD6Q9BR61 282 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 CWC15Q9P013 229 aaKnown RBP19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 NME7Q9Y5B8 376 aa19.14■□□□□ 0.65
CCDC88C-203ENST00000389856 XPO1O14980 1071 aaKnown RBP19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 SART1O43290 800 aaKnown RBP19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 IVLP07476 585 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 CCDC130P13994 396 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 PSMA2P25787 234 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 HSPA9P38646 679 aaKnown RBP19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 SSR1P43307 286 aaKnown RBP19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 CARSP49589 748 aaKnown RBP19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 PEX5P50542 639 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 CCL23P55773 120 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 TSPY1Q01534 308 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 PDE4CQ08493 712 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 IKBKEQ14164 716 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 GPNMBQ14956 572 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 HADHQ16836 314 aaKnown RBP19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 ODF2Q5BJF6 829 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 COLGALT2Q8IYK4 626 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 SEC14L1Q92503 715 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 COLEC11Q9BWP8 271 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 DUSP16Q9BY84 665 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 FAM114A2Q9NRY5 505 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 MTUS1Q9ULD2 1270 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 NFU1Q9UMS0 254 aa19.13■□□□□ 0.65
CCDC88C-203ENST00000389856 GOLGA6CA6NDK9 693 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 E5RJQ4 531 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 EFCAB14O75071 495 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 PFKMP08237 780 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 FAM200BP0CF97 657 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 GOLGA6DP0CG33 693 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 NPR3P17342 541 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 OR1G1P47890 313 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 RPL7AP62424 266 aaKnown RBP19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 MDH1BQ5I0G3 518 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 CFAP58Q5T655 872 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 OVOS1Q6IE37 1185 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 LLGL2Q6P1M3 1020 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 LRIG3Q6UXM1 1119 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 KLHL7Q8IXQ5 586 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 IQCKQ8N0W5 287 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 MYCBPAPQ8TBZ2 947 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 SCLYQ96I15 445 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 TMEM175Q9BSA9 504 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 METTL5Q9NRN9 209 aaKnown RBP19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 ASNSD1Q9NWL6 643 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 DDX56Q9NY93 547 aaKnown RBP19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 GOLGA6AQ9NYA3 693 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 USTQ9Y2C2 406 aa19.12■□□□□ 0.65
CCDC88C-203ENST00000389856 TSC2P49815 1807 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 FAM187AA6NFU0 413 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 RNF8O76064 485 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 FGGP02679 453 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 CYP2C18P33260 490 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 SLC6A3Q01959 620 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 ELAVL2Q12926 359 aaKnown RBP19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 KATNAL2Q8IYT4 538 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 IFT81Q8WYA0 676 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 ALG3Q92685 438 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 RUNDC3BQ96NL0 473 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 PAAF1Q9BRP4 392 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 RAB17Q9H0T7 212 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 CACNG4Q9UBN1 327 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 HTTP42858 3142 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 CARNS1A5YM72 827 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 SYN3O14994 580 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 TADA2AO75478 443 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 KRT7P08729 469 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 ACAT1P24752 427 aaKnown RBP19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 GBP1P32455 592 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 BRCC3P46736 316 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 RPL34P49207 117 aaKnown RBP19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 RGS7P49802 495 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 GYS2P54840 703 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 MTMR3Q13615 1198 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 SPDYCQ5MJ68 293 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 PMF1Q6P1K2 205 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 POLNQ7Z5Q5 900 aa19.11■□□□□ 0.65
CCDC88C-203ENST00000389856 FUKQ8N0W3 1084 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms