RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 TFAP2DQ7Z6R9 452 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 MPP6Q9NZW5 540 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 LYVE1Q9Y5Y7 322 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 WDR19Q8NEZ3 1342 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 CCDC188H7C350 402 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 FOXN1O15353 648 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 SNUPNO95149 360 aaKnown RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 CDC25BP30305 580 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 HSPA9P38646 679 aaKnown RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 SARSP49591 514 aaKnown RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 CSTF3Q12996 717 aaKnown RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 BOP1Q14137 746 aaKnown RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 FBXO38Q6PIJ6 1188 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 KLHL17Q6TDP4 642 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 C16orf89Q6UX73 402 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.87□□□□□ -0.35
CHD3-203ENST00000380358 MIF4GDA9UHW6 222 aaKnown RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 CYP2C19P33261 490 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 TMED10P49755 219 aaKnown RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 SNX30Q5VWJ9 437 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 PROSER1Q86XN7 944 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 MOSPD2Q8NHP6 518 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 PANX2Q96RD6 677 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 THOC2Q8NI27 1593 aaKnown RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 IDH3BO43837 385 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 PDHA2P29803 388 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 GRK4P32298 578 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 NCF4Q15080 339 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 TTC33Q6PID6 262 aaPredicted RBP12.87□□□□□ -0.35
CHD3-203ENST00000380358 CACTIN-AS1Q8N1I8 211 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 EXOC2Q96KP1 924 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 NT5C1AQ9BXI3 368 aa12.87□□□□□ -0.35
CHD3-203ENST00000380358 A0A1W2PQ27 194 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 A0A1W2PQ64 194 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 A0A1W2PQD8 194 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 URODP06132 367 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 POLBP06746 335 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 GARTP22102 1010 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 STXBP1P61764 594 aaKnown RBP12.86□□□□□ -0.35
CHD3-203ENST00000380358 CACHD1Q5VU97 1274 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 GJB7Q6PEY0 223 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 UBASH3BQ8TF42 649 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 HPDLQ96IR7 371 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 IARS2Q9NSE4 1012 aaKnown RBP12.86□□□□□ -0.35
CHD3-203ENST00000380358 ZMYM5Q9UJ78 669 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 FGRP09769 529 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 CHN1P15882 459 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 KCNA3P22001 575 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 CYP2F1P24903 491 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 CDC27P30260 824 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 KCNJ1P48048 391 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 FAAH2Q6GMR7 532 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 SYTL5Q8TDW5 730 aaPredicted RBP12.86□□□□□ -0.35
CHD3-203ENST00000380358 PRRG4Q9BZD6 226 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 ZCCHC17Q9NP64 241 aaKnown RBP12.86□□□□□ -0.35
CHD3-203ENST00000380358 VTA1Q9NP79 307 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 GPATCH2LQ9NWQ4 482 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 SH3GLB1Q9Y371 365 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 TBKBP1A7MCY6 615 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 PHF20L1A8MW92 1017 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 KCNQ2O43526 872 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 PTGER2P43116 358 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 FGD3Q5JSP0 725 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 EFL1Q7Z2Z2 1120 aaKnown RBP12.86□□□□□ -0.35
CHD3-203ENST00000380358 ATP6V0D2Q8N8Y2 350 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 ATG16L2Q8NAA4 619 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 CPA4Q9UI42 421 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 SLC12A8A0AV02 714 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 RTN2O75298 545 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 CPT1AP50416 773 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 PRKCEQ02156 737 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 PFKFB3Q16875 520 aaPredicted RBP12.86□□□□□ -0.35
CHD3-203ENST00000380358 POMZP3Q6PJE2 187 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 TPGS1Q6ZTW0 290 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 LRRC8DQ7L1W4 858 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 RSPH1Q8WYR4 309 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 RBM15Q96T37 977 aaKnown RBP eCLIP12.86□□□□□ -0.35
CHD3-203ENST00000380358 ZNF624Q9P2J8 865 aaPredicted RBP12.86□□□□□ -0.35
CHD3-203ENST00000380358 MAPK11Q15759 364 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 CTXN3Q4LDR2 81 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 ZKSCAN4Q969J2 545 aaPredicted RBP12.86□□□□□ -0.35
CHD3-203ENST00000380358 COLEC11Q9BWP8 271 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 NT5MQ9NPB1 228 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 PARD3Q8TEW0 1356 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 SEC16BQ96JE7 1060 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 GOLPH3Q9H4A6 298 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 TAF1DQ9H5J8 278 aaPredicted RBP12.86□□□□□ -0.35
CHD3-203ENST00000380358 RIC8BQ9NVN3 520 aa12.86□□□□□ -0.35
CHD3-203ENST00000380358 AKAP7Q9P0M2 348 aaPredicted RBP12.86□□□□□ -0.35
CHD3-203ENST00000380358 TMEM191CA6NGB0 347 aa12.85□□□□□ -0.35
CHD3-203ENST00000380358 ODC1P11926 461 aa12.85□□□□□ -0.35
CHD3-203ENST00000380358 SOX6P35712 828 aa12.85□□□□□ -0.35
CHD3-203ENST00000380358 EMC2Q15006 297 aa12.85□□□□□ -0.35
CHD3-203ENST00000380358 RESP18Q5W5W9 173 aa12.85□□□□□ -0.35
CHD3-203ENST00000380358 FAM124AQ86V42 546 aa12.85□□□□□ -0.35
CHD3-203ENST00000380358 FAM20CQ8IXL6 584 aa12.85□□□□□ -0.35
CHD3-203ENST00000380358 SCAIQ8N9R8 606 aa12.85□□□□□ -0.35
CHD3-203ENST00000380358 TMEM39BQ9GZU3 492 aa12.85□□□□□ -0.35
CHD3-203ENST00000380358 RRAGCQ9HB90 399 aa12.85□□□□□ -0.35
CHD3-203ENST00000380358 EFR3BQ9Y2G0 817 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms