RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 RWDD4Q6NW29 188 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 WDR93Q6P2C0 686 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 PNPLA3Q9NST1 481 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 PCDHB8Q9UN66 801 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 KIAA1024Q9UPX6 916 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 GINS2Q9Y248 185 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 TNKSO95271 1327 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 A0A1W2PQC6 194 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 C2orf71A6NGG8 1288 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 PDLIM1O00151 329 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 EML1O00423 815 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 RIMBP2O15034 1052 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 HIST1H2AGP0C0S8 130 aaPredicted RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 HIST1H2ADP20671 130 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 ERP29P30040 261 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 ADSSP30520 456 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 YAP1P46937 504 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 RGS4P49798 205 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 ARHGEF6Q15052 776 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 HSD17B12Q53GQ0 312 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 ARL6IP4Q66PJ3 421 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 RCOR2Q8IZ40 523 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 ZHX1-C8orf76Q96EF9 292 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 HIST1H2AHQ96KK5 128 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 HIST1H2AJQ99878 128 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 H2AFJQ9BTM1 129 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 SLC52A1Q9NWF4 448 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 CNOT8Q9UFF9 292 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 ITSN2Q9NZM3 1697 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 LOC100506127A0A0U1RQW1 187 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 SMU1Q2TAY7 513 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 LACTB2Q53H82 288 aaPredicted RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 PERM1Q5SV97 790 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 FRMD7Q6ZUT3 714 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 DQX1Q8TE96 717 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 EMILIN2Q9BXX0 1053 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 DDX47Q9H0S4 455 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 PCDH18Q9HCL0 1135 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 INTS10Q9NVR2 710 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 ARPP21Q9UBL0 812 aaPredicted RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 VTI1BQ9UEU0 232 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 UBQLN1Q9UMX0 589 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 CBY1Q9Y3M2 126 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 ADGRG1Q9Y653 693 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 HSD3B2P26439 372 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 MAGEA8P43361 318 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 TRIM32Q13049 653 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 TBCELQ5QJ74 424 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 HAUS6Q7Z4H7 955 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 TMEM17Q86X19 198 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 ADHFE1Q8IWW8 467 aa9.03□□□□□ -0.96
LIG3-202ENST00000378526 TRMT13Q9NUP7 481 aaKnown RBP9.03□□□□□ -0.96
LIG3-202ENST00000378526 CYP2D7A0A087X1C5 515 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 hCG_1984214I3L0E3 225 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 ULK1O75385 1050 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 PGK2P07205 417 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 NUDT7P0C024 238 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 LONRF1Q17RB8 773 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 INO80DQ53TQ3 878 aaPredicted RBP9.02□□□□□ -0.96
LIG3-202ENST00000378526 UGT3A1Q6NUS8 523 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 KBTBD2Q8IY47 623 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 TEX47Q8TBZ9 253 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 ARHGEF26Q96DR7 871 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 NEDD4LQ96PU5 975 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 SARS2Q9NP81 518 aaKnown RBP9.02□□□□□ -0.96
LIG3-202ENST00000378526 NDFIP2Q9NV92 336 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 XPR1Q9UBH6 696 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 NEU2Q9Y3R4 380 aa9.02□□□□□ -0.96
LIG3-202ENST00000378526 MCL1Q07820 350 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 DDR1Q08345 913 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 ZCCHC8Q6NZY4 707 aaKnown RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 CMTR2Q8IYT2 770 aaKnown RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 ART5Q96L15 291 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 NACC1Q96RE7 527 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 EPB41L1Q9H4G0 881 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 KIAA1586Q9HCI6 787 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 SAMSN1Q9NSI8 373 aaKnown RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 RAB23Q9ULC3 237 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 SRPRBQ9Y5M8 271 aaKnown RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 ADGRA2Q96PE1 1338 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 FESP07332 822 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 ZNF24P17028 368 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 MAGEA12P43365 314 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 ZAP70P43403 619 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 PHC1P78364 1004 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 DEFA5Q01523 94 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 ARID5BQ14865 1188 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 SPOUT1Q5T280 376 aaKnown RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 PRR5LQ6MZQ0 368 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 SYCE2Q6PIF2 218 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 GPD1LQ8N335 351 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 CAMKK2Q96RR4 588 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 LRRC1Q9BTT6 524 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 CLEC4AQ9UMR7 237 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 SCAF11Q99590 1463 aaKnown RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 TROQ12816 1431 aaPredicted RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 CDHR2Q9BYE9 1310 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 ESYT3A0FGR9 886 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 IRGMA1A4Y4 181 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 SERPINA1P01009 418 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms