RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 ASB16Q96NS5 453 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 GCNAQ96QF7 691 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 PLA2G2FQ9BZM2 168 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 VPS16Q9H269 839 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 HSD3B7Q9H2F3 369 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 DMAP1Q9NPF5 467 aaPredicted RBP14.17□□□□□ -0.14
VPS28-202ENST00000377348 IGSF9Q9P2J2 1179 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 SORCS3Q9UPU3 1222 aa14.17□□□□□ -0.14
VPS28-202ENST00000377348 GTPBP10A4D1E9 387 aaKnown RBP14.16□□□□□ -0.14
VPS28-202ENST00000377348 LETM1O95202 739 aaPredicted RBP14.16□□□□□ -0.14
VPS28-202ENST00000377348 ALADP13716 330 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 CD19P15391 556 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 ZNF18P17022 549 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 VIPR2P41587 438 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 SLC5A3P53794 718 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 KCNMA1Q12791 1236 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 TDGQ13569 410 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 NFKBIBQ15653 356 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 SKOR2Q2VWA4 1001 aaPredicted RBP14.16□□□□□ -0.14
VPS28-202ENST00000377348 ZSCAN23Q3MJ62 389 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 ARHGAP15Q53QZ3 475 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 TXNDC8Q6A555 127 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 DHX40Q8IX18 779 aaKnown RBP14.16□□□□□ -0.14
VPS28-202ENST00000377348 SCAMP5Q8TAC9 235 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 TTLL2Q9BWV7 592 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 NAT10Q9H0A0 1025 aaKnown RBP14.16□□□□□ -0.14
VPS28-202ENST00000377348 FAM124BQ9H5Z6 455 aaPredicted RBP14.16□□□□□ -0.14
VPS28-202ENST00000377348 CSNK1G1Q9HCP0 422 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 SIX2Q9NPC8 291 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 UXTQ9UBK9 157 aaPredicted RBP14.16□□□□□ -0.14
VPS28-202ENST00000377348 APEX2Q9UBZ4 518 aa14.16□□□□□ -0.14
VPS28-202ENST00000377348 AJAP1Q9UKB5 411 aaPredicted RBP14.16□□□□□ -0.14
VPS28-202ENST00000377348 NCANO14594 1321 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 FAM86C2PA6NEL3 165 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 TNFRSF10BO14763 440 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 ATP1A3P13637 1013 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 KRT5P13647 590 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 ZNF165P49910 485 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 ARHGAP44Q17R89 818 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 GOLGA7BQ2TAP0 167 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 SGO2Q562F6 1265 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 ARHGAP17Q68EM7 881 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 DPY19L2P1Q6NXN4 242 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 MTSS1LQ765P7 747 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 GPRIN1Q7Z2K8 1008 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 TTC30AQ86WT1 665 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 NUP93Q8N1F7 819 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 MAB21L3Q8N8X9 362 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 RBBP8NLQ8NC74 664 aaPredicted RBP14.15□□□□□ -0.14
VPS28-202ENST00000377348 TFAP2BQ92481 460 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 MRPS31Q92665 395 aaKnown RBP14.15□□□□□ -0.14
VPS28-202ENST00000377348 EDAQ92838 391 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 SMARCD2Q92925 531 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 RSPRY1Q96DX4 576 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 CEP295NLQ96MC4 621 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 BPIFA3Q9BQP9 254 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 SLC46A2Q9BY10 475 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 DNAI2Q9GZS0 605 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 SMG9Q9H0W8 520 aaKnown RBP14.15□□□□□ -0.14
VPS28-202ENST00000377348 TASP1Q9H6P5 420 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 TRPC7Q9HCX4 862 aa14.15□□□□□ -0.14
VPS28-202ENST00000377348 GREB1Q4ZG55 1949 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 C2orf78A6NCI8 922 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 HHLA1C9JL84 531 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 PRAMEF12O95522 483 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 VDRP11473 427 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 NPR3P17342 541 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 CDK11BP21127 795 aaKnown RBP14.14□□□□□ -0.15
VPS28-202ENST00000377348 BRD2P25440 801 aaKnown RBP14.14□□□□□ -0.15
VPS28-202ENST00000377348 ZNF132P52740 706 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 COPB1P53618 953 aaKnown RBP14.14□□□□□ -0.15
VPS28-202ENST00000377348 TAF10Q12962 218 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 GRM2Q14416 872 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 ARID3BQ8IVW6 561 aaPredicted RBP14.14□□□□□ -0.15
VPS28-202ENST00000377348 FBXO32Q969P5 355 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 NXPE3Q969Y0 559 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 ELSPBP1Q96BH3 223 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 ZSWIM1Q9BR11 485 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 LSM14BQ9BX40 385 aaKnown RBP14.14□□□□□ -0.15
VPS28-202ENST00000377348 DUSP16Q9BY84 665 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 GPR88Q9GZN0 384 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 ZFP14Q9HCL3 533 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 C11orf16Q9NQ32 467 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 LIMA1Q9UHB6 759 aaKnown RBP14.14□□□□□ -0.15
VPS28-202ENST00000377348 TSPAN16Q9UKR8 245 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 DUSP12Q9UNI6 340 aa14.14□□□□□ -0.15
VPS28-202ENST00000377348 TECTAO75443 2155 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 BECN2A8MW95 431 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 TULP2O00295 520 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 O00370 1275 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 ECI2O75521 394 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 RTN3O95197 1032 aaPredicted RBP14.13□□□□□ -0.15
VPS28-202ENST00000377348 CFHP08603 1231 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 PAEPP09466 180 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 YWHAQP27348 245 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 KLK7P49862 253 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 MFAP3P55082 362 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 GPC5P78333 572 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 IQCB1Q15051 598 aa14.13□□□□□ -0.15
VPS28-202ENST00000377348 VITQ6UXI7 678 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms