RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 CD2BP2O95400 341 aaKnown RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 FASP25445 335 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 ITGB3BPQ13352 177 aaPredicted RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 LAYNQ6UX15 382 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 RASSF5Q8WWW0 418 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 ZNF341Q9BYN7 854 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 ANXA9O76027 345 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 ZCCHC18P0CG32 403 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 NQO1P15559 274 aaKnown RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 ALOX12P18054 663 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 PSMB9P28065 219 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 TKTP29401 623 aaKnown RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 RGS21Q2M5E4 152 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 ZBTB49Q6ZSB9 765 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 GUF1Q8N442 669 aaKnown RBP12.04□□□□□ -0.48
VPS13A-205ENST00000376636 MCEEQ96PE7 176 aa12.04□□□□□ -0.48
VPS13A-205ENST00000376636 GNG14A0A1W2PPG7 69 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 CD3EAPO15446 510 aaKnown RBP12.03□□□□□ -0.48
VPS13A-205ENST00000376636 WEE2P0C1S8 567 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 RFT1Q96AA3 541 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 APEX2Q9UBZ4 518 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 PNMA8BQ9ULN7 279 aaPredicted RBP12.03□□□□□ -0.48
VPS13A-205ENST00000376636 MAPKBP1O60336 1514 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 FAM92AA1XBS5 289 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 TMEM114B3SHH9 223 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 CHRM3P20309 590 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 CCNG1P51959 295 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 POMGNT2Q8NAT1 580 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 CENPIQ92674 756 aaPredicted RBP12.03□□□□□ -0.48
VPS13A-205ENST00000376636 BAIAP3O94812 1187 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 TFB1MQ8WVM0 346 aaKnown RBP12.03□□□□□ -0.48
VPS13A-205ENST00000376636 PHF11Q9UIL8 331 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 ABCB11O95342 1321 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 WDR19Q8NEZ3 1342 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 VPS26AO75436 327 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 GDF11O95390 407 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 CYP21A2P08686 494 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 HARS2P49590 506 aaKnown RBP12.03□□□□□ -0.48
VPS13A-205ENST00000376636 DPYDQ12882 1025 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 MAPK11Q15759 364 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 DENND1BQ6P3S1 775 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 ABRAXAS1Q6UWZ7 409 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 ECE2O60344 883 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 TSPAN19P0C672 248 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 TGM2P21980 687 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 HK2P52789 917 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 IL5RAQ01344 420 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 MAD2L1Q13257 205 aaPredicted RBP12.03□□□□□ -0.48
VPS13A-205ENST00000376636 MRNIPQ6NTE8 343 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 TMEM26Q6ZUK4 368 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 LXNQ9BS40 222 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 LRRC1Q9BTT6 524 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 POLR1DQ9Y2S0 133 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 ERVK-10P10266 1014 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 PCSK7Q16549 785 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 BARGINQ6ZT62 677 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 CLCC1Q96S66 551 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 COPRSQ9NQ92 184 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.03□□□□□ -0.48
VPS13A-205ENST00000376636 CCNIQ14094 377 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 RBBP8NLQ8NC74 664 aaPredicted RBP12.03□□□□□ -0.48
VPS13A-205ENST00000376636 ZNF304Q9HCX3 659 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 SLC16A4O15374 487 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 PHGDHO43175 533 aaKnown RBP12.03□□□□□ -0.48
VPS13A-205ENST00000376636 TTKP33981 857 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 BTN3A2P78410 334 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 ARHGAP27Q6ZUM4 889 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 SLC22A9Q8IVM8 553 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 ZCCHC17Q9NP64 241 aaKnown RBP12.03□□□□□ -0.48
VPS13A-205ENST00000376636 ZNF112Q9UJU3 913 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 KPNA5O15131 536 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 TNFRSF21O75509 655 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 ITGA9Q13797 1035 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 PGBD3Q8N328 593 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 ZNF671Q8TAW3 534 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 VTI1BQ9UEU0 232 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 LRCH1Q9Y2L9 728 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 PPP2R3BQ9Y5P8 575 aa12.03□□□□□ -0.48
VPS13A-205ENST00000376636 POLR1AO95602 1720 aaPredicted RBP12.03□□□□□ -0.48
VPS13A-205ENST00000376636 IL13P35225 146 aa12.02□□□□□ -0.48
VPS13A-205ENST00000376636 CCNJLQ8IV13 435 aa12.02□□□□□ -0.48
VPS13A-205ENST00000376636 NSUN6Q8TEA1 469 aaKnown RBP12.02□□□□□ -0.48
VPS13A-205ENST00000376636 VCPKMTQ9H867 229 aa12.02□□□□□ -0.48
VPS13A-205ENST00000376636 CRLS1Q9UJA2 301 aa12.02□□□□□ -0.48
VPS13A-205ENST00000376636 TPST1O60507 370 aa12.02□□□□□ -0.48
VPS13A-205ENST00000376636 ATP9AO75110 1047 aa12.02□□□□□ -0.48
VPS13A-205ENST00000376636 NANOGNBQ7Z5D8 188 aa12.02□□□□□ -0.48
VPS13A-205ENST00000376636 UTP15Q8TED0 518 aaKnown RBP12.02□□□□□ -0.48
VPS13A-205ENST00000376636 MYRFQ9Y2G1 1151 aa12.02□□□□□ -0.48
VPS13A-205ENST00000376636 EXOSC10Q01780 885 aaKnown RBP12.02□□□□□ -0.48
VPS13A-205ENST00000376636 WDR41Q9HAD4 459 aa12.02□□□□□ -0.48
VPS13A-205ENST00000376636 PRDM5Q9NQX1 630 aaPredicted RBP12.02□□□□□ -0.48
VPS13A-205ENST00000376636 TLR7Q9NYK1 1049 aaKnown RBP12.02□□□□□ -0.48
VPS13A-205ENST00000376636 DUSP12Q9UNI6 340 aa12.02□□□□□ -0.48
VPS13A-205ENST00000376636 PEG3Q9GZU2 1588 aa12.02□□□□□ -0.48
VPS13A-205ENST00000376636 BCLAF3A2AJT9 711 aaKnown RBP12.02□□□□□ -0.49
VPS13A-205ENST00000376636 KATNA1O75449 491 aa12.02□□□□□ -0.49
VPS13A-205ENST00000376636 PTGER2P43116 358 aa12.02□□□□□ -0.49
VPS13A-205ENST00000376636 MAGEA4P43358 317 aa12.02□□□□□ -0.49
VPS13A-205ENST00000376636 EIF4A1P60842 406 aaKnown RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms