RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 TOB1P50616 345 aaPredicted RBP5.38□□□□□ -1.55
USP48-202ENST00000374730 RPS8P62241 208 aaKnown RBP5.38□□□□□ -1.55
USP48-202ENST00000374730 CHAF1AQ13111 956 aaPredicted RBP5.38□□□□□ -1.55
USP48-202ENST00000374730 ATP13A4Q4VNC1 1196 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 SBK1Q52WX2 424 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 RABL3Q5HYI8 236 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 RRP12Q5JTH9 1297 aaKnown RBP5.38□□□□□ -1.55
USP48-202ENST00000374730 DNTTIP2Q5QJE6 756 aaKnown RBP5.38□□□□□ -1.55
USP48-202ENST00000374730 BROXQ5VW32 411 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 KRBA2Q6ZNG9 492 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 RASSF3Q86WH2 238 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 SLC41A1Q8IVJ1 513 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 C17orf53Q8N3J3 647 aaPredicted RBP5.38□□□□□ -1.55
USP48-202ENST00000374730 ENAHQ8N8S7 591 aaPredicted RBP5.38□□□□□ -1.55
USP48-202ENST00000374730 FANCBQ8NB91 859 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 ZNF384Q8TF68 577 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 SDR42E1Q8WUS8 393 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 LARP4BQ92615 738 aaKnown RBP5.38□□□□□ -1.55
USP48-202ENST00000374730 CLIP3Q96DZ5 547 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 CHFRQ96EP1 664 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 ATP8A2Q9NTI2 1148 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 ARPP21Q9UBL0 812 aaPredicted RBP5.38□□□□□ -1.55
USP48-202ENST00000374730 ABCF2Q9UG63 623 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 NRBP1Q9UHY1 535 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 PRSS50Q9UI38 385 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 FBXO2Q9UK22 296 aaPredicted RBP5.38□□□□□ -1.55
USP48-202ENST00000374730 SPATA31A6Q5VVP1 1343 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 ROBO3Q96MS0 1386 aa5.38□□□□□ -1.55
USP48-202ENST00000374730 GRXCR1A8MXD5 290 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 BTBD18B2RXH4 712 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 UBE2Q2LH0YL09 131 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 PPFIA4O75335 1185 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 PARNO95453 639 aaKnown RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 LTA4HP09960 611 aaKnown RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 XBP1P17861 261 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 TM4SF1P30408 202 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 GUCY1A2P33402 732 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 DYNLL1P63167 89 aaKnown RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 CCZ1BP86790 482 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 CCZ1P86791 482 aaPredicted RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 AKAP17AQ02040 695 aaKnown RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 MECOMQ03112 1051 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 DUSP2Q05923 314 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 MGAT5Q09328 741 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 TROAPQ12815 778 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 LRMPQ12912 555 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 MRPL49Q13405 166 aaKnown RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 PLEKHG6Q3KR16 790 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 IFIT1BQ5T764 474 aaKnown RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 CTR9Q6PD62 1173 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 C15orf52Q6ZUT6 534 aaKnown RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 TMTC3Q6ZXV5 915 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 DOK3Q7L591 496 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 CATIPQ7Z7H3 387 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 NBPF5PQ86XG9 351 aaPredicted RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 IQCA1Q86XH1 822 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 LDLRAD3Q86YD5 345 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 LYSMD2Q8IV50 215 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 LRRC8AQ8IWT6 810 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 TRIML1Q8N9V2 468 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 GLB1L3Q8NCI6 653 aaPredicted RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 CCDC150Q8NCX0 1101 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 OR14C36Q8NHC7 312 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 SLC25A43Q8WUT9 341 aaPredicted RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 USP7Q93009 1102 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 LENG9Q96B70 501 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 PAWRQ96IZ0 340 aaKnown RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 PRRX2Q99811 253 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 CRNKL1Q9BZJ0 848 aaKnown RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 SLC2A4RGQ9NR83 387 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 GPRC5BQ9NZH0 403 aa5.37□□□□□ -1.55
USP48-202ENST00000374730 EVLQ9UI08 416 aaPredicted RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 HOOK1Q9UJC3 728 aaKnown RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 CCNL1Q9UK58 526 aaPredicted RBP5.37□□□□□ -1.55
USP48-202ENST00000374730 BAZ2BQ9UIF8 2168 aaKnown RBP5.36□□□□□ -1.55
USP48-202ENST00000374730 A0A087WWV3 80 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 KIF2AO00139 706 aaPredicted RBP5.36□□□□□ -1.55
USP48-202ENST00000374730 TRIM24O15164 1050 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 ZEB2O60315 1214 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 ULK1O75385 1050 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 GYPEP15421 78 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 KLRK1P26718 216 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 KRT2P35908 639 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 CASRP41180 1078 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 TRAPPC10P48553 1259 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 GZMKP49863 264 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 MYL5Q02045 173 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 GRAPQ13588 217 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 SYCP1Q15431 976 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 FAM214AQ32MH5 1076 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 CRB2Q5IJ48 1285 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 CT47A1Q5JQC4 288 aaPredicted RBP5.36□□□□□ -1.55
USP48-202ENST00000374730 OLFM4Q6UX06 510 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 RNF180Q86T96 592 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 FAM83AQ86UY5 434 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 ULK2Q8IYT8 1036 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 RPUSD2Q8IZ73 545 aaKnown RBP5.36□□□□□ -1.55
USP48-202ENST00000374730 MSL3Q8N5Y2 521 aaKnown RBP5.36□□□□□ -1.55
USP48-202ENST00000374730 CNNM3Q8NE01 707 aa5.36□□□□□ -1.55
USP48-202ENST00000374730 OR52N2Q8NGI0 321 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms