RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 TAF4BQ92750 862 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 ELMO3Q96BJ8 720 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 SDCBP2Q9H190 292 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 EBF3Q9H4W6 596 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 TMEM30AQ9NV96 361 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 ZSCAN32Q9NX65 697 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 ANAPC1Q9H1A4 1944 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 C2orf78A6NCI8 922 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 KINO60870 393 aaKnown RBP23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 CKMP06732 381 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 TDGF1P13385 188 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 P4HA1P13674 534 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 PFKLP17858 780 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 CCR3P51677 355 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 VAMP7P51809 220 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 PON2Q15165 354 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 ZNF77Q15935 545 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 TRIM68Q6AZZ1 485 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 SCARA5Q6ZMJ2 495 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 INTS8Q75QN2 995 aaKnown RBP23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 FMR1NBQ8N0W7 255 aaPredicted RBP23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 ARL14EPQ8N8R7 260 aaPredicted RBP23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 TNIP3Q96KP6 325 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 FAM126AQ9BYI3 521 aaPredicted RBP23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 RBM12Q9NTZ6 932 aaKnown RBP23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 TRPM5Q9NZQ8 1165 aa23.1■■□□□ 1.29
CCDC28B-201ENST00000373602 OTOL1A6NHN0 477 aaPredicted RBP23.09■■□□□ 1.29
CCDC28B-201ENST00000373602 CLDN5O00501 218 aa23.09■■□□□ 1.29
CCDC28B-201ENST00000373602 ASS1P00966 412 aaKnown RBP23.09■■□□□ 1.29
CCDC28B-201ENST00000373602 RPL13P26373 211 aaKnown RBP23.09■■□□□ 1.29
CCDC28B-201ENST00000373602 PPP3CCP48454 512 aa23.09■■□□□ 1.29
CCDC28B-201ENST00000373602 ENPEPQ07075 957 aa23.09■■□□□ 1.29
CCDC28B-201ENST00000373602 USP4Q13107 963 aa23.09■■□□□ 1.29
CCDC28B-201ENST00000373602 MTF1Q14872 753 aa23.09■■□□□ 1.29
CCDC28B-201ENST00000373602 PDGFRLQ15198 375 aa23.09■■□□□ 1.29
CCDC28B-201ENST00000373602 ZCWPW2Q504Y3 356 aa23.09■■□□□ 1.29
CCDC28B-201ENST00000373602 SPEM1Q8N4L4 309 aa23.09■■□□□ 1.29
CCDC28B-201ENST00000373602 ATRIPQ8WXE1 791 aa23.09■■□□□ 1.29
CCDC28B-201ENST00000373602 LILRB5O75023 590 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 HLA-DRAP01903 254 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 ARSAP15289 507 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 TCF3P15923 654 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 HDCP19113 662 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 PDE6CP51160 858 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 ADAM9Q13443 819 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 PNOCQ13519 176 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 CCINQ13939 588 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 PPP2R5DQ14738 602 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 PAQR9Q6ZVX9 377 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 FAM186BQ8IYM0 893 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 SYNPOQ8N3V7 929 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 SUMF1Q8NBK3 374 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 OSCP1Q8WVF1 389 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 CHFRQ96EP1 664 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 ARHGAP26Q9UNA1 814 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 DMDP11532 3685 aa23.08■■□□□ 1.29
CCDC28B-201ENST00000373602 ATP8B3O60423 1300 aa23.08■■□□□ 1.28
CCDC28B-201ENST00000373602 ZNF840PA6NDX5 716 aa23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 GOLGA6L4A6NEF3 574 aa23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 TRIM49P0CI25 452 aa23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 TRIM49CP0CI26 452 aa23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 KRT13P13646 458 aa23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 PSMC2P35998 433 aaKnown RBP23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 PIK3CAP42336 1068 aa23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 CXCL12P48061 93 aa23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 MCCD1P59942 119 aaPredicted RBP23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 SATB1Q01826 763 aa23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 EDRF1Q3B7T1 1238 aa23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 SPOPLQ6IQ16 392 aa23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 FAM35AQ86V20 835 aa23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 ENGASEQ8NFI3 743 aa23.07■■□□□ 1.28
CCDC28B-201ENST00000373602 ASPAP45381 313 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 GCLMP48507 274 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 NRLP54845 237 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 PPP3CAQ08209 521 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 TAF10Q12962 218 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 Q6ZS52 159 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 ACOT1Q86TX2 421 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 UNC93AQ86WB7 457 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 SMYD4Q8IYR2 804 aaPredicted RBP23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 NUP93Q8N1F7 819 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 CRYBG2Q8N1P7 616 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 TAS1R2Q8TE23 839 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 SH3RF2Q8TEC5 729 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 SLITRK1Q96PX8 696 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 RMND1Q9NWS8 449 aa23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 DUS2Q9NX74 493 aaKnown RBP23.06■■□□□ 1.28
CCDC28B-201ENST00000373602 TRDMT1O14717 391 aaKnown RBP23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 RTN3O95197 1032 aaPredicted RBP23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 PAPSS2O95340 614 aaPredicted RBP23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 YWHAQP27348 245 aa23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 NDST1P52848 882 aa23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 AMPD2Q01433 879 aa23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 TMEM196Q5HYL7 178 aa23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 FUKQ8N0W3 1084 aa23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 CPA6Q8N4T0 437 aa23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 SMARCD1Q96GM5 515 aa23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 KCNK16Q96T55 309 aa23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 MED10Q9BTT4 135 aa23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 IMPG2Q9BZV3 1241 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms