RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SLC25A41Q8N5S1 370 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 TAS1R2Q8TE23 839 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 TMEM161AQ9NX61 479 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 HAO1Q9UJM8 370 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 UBQLN1Q9UMX0 589 aaKnown RBP11.86□□□□□ -0.51
PTPRF-203ENST00000372407 RRN3P2A6NIE6 340 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 VDRP11473 427 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 FGFR2P21802 821 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 AKT1P31749 480 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 PTENP60484 403 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 TMEM62Q0P6H9 643 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 PDK2Q15119 407 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 PKN1Q16512 942 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 NOTUMQ6P988 496 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 WNK4Q96J92 1243 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 CNDP1Q96KN2 507 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 FOPNLQ96NB1 174 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 SHCBP1LQ9BZQ2 653 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 RIOX1Q9H6W3 641 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 DDIT4Q9NX09 232 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 CDV3Q9UKY7 258 aaKnown RBP11.86□□□□□ -0.51
PTPRF-203ENST00000372407 FAM205AQ6ZU69 1335 aa11.86□□□□□ -0.51
PTPRF-203ENST00000372407 EVPLLA8MZ36 301 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 SUPT3HB4E1H0 165 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 CFAP99D6REC4 459 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 E7ENQ6 273 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 M0R3G1 203 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 TIMM44O43615 452 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 KDM1AO60341 852 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 CLASP2O75122 1294 aaKnown RBP11.85□□□□□ -0.51
PTPRF-203ENST00000372407 THRAP10827 490 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 SARSP49591 514 aaKnown RBP11.85□□□□□ -0.51
PTPRF-203ENST00000372407 NUDT2P50583 147 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 MRPS15P82914 257 aaKnown RBP11.85□□□□□ -0.51
PTPRF-203ENST00000372407 ADCK1Q86TW2 530 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 RAB42Q8N4Z0 105 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 PRPF18Q99633 342 aaKnown RBP11.85□□□□□ -0.51
PTPRF-203ENST00000372407 DEFB129Q9H1M3 183 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 EFCAB1Q9HAE3 211 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 ADARB2Q9NS39 739 aaKnown RBP11.85□□□□□ -0.51
PTPRF-203ENST00000372407 NDUFA13Q9P0J0 144 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 POLLQ9UGP5 575 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 PCDHB8Q9UN66 801 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 NFAT5O94916 1531 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 SDR42E2A6NKP2 422 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 C5orf58C9J3I9 102 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 PMPCBO75439 489 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 EPHX2P34913 555 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 NAMPTP43490 491 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 HSPA13P48723 471 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 SKOR1P84550 965 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 LRRC74AQ0VAA2 488 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 TWF1Q12792 350 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 LAMC2Q13753 1193 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 KCNT1Q5JUK3 1230 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 SV2AQ7L0J3 742 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 CHSY1Q86X52 802 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 PLD3Q8IV08 490 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 ACER1Q8TDN7 264 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 SEMA4AQ9H3S1 761 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 ZNF556Q9HAH1 456 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 PIDD1Q9HB75 910 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 CD248Q9HCU0 757 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 DCDC2Q9UHG0 476 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 LZTS1Q9Y250 596 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 DTNAQ9Y4J8 743 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 MAGEA13PA6NCF6 341 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 ONECUT3O60422 494 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-203ENST00000372407 ARP10275 920 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 KLRK1P26718 216 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 S100A5P33763 92 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 PTPN7P35236 360 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 ZNF157P51786 506 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-203ENST00000372407 HUNKP57058 714 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 SLC26A11Q86WA9 606 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 STX19Q8N4C7 294 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 TTC30BQ8N4P2 665 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 VPS37AQ8NEZ2 397 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 RBBP8Q99708 897 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 M0QYT0 321 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 TJAP1Q5JTD0 557 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 AGAP9Q5VTM2 703 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 P3H2Q8IVL5 708 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 CNPY3Q9BT09 278 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 CAAP1Q9H8G2 361 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 VPS9D1Q9Y2B5 631 aa11.85□□□□□ -0.51
PTPRF-203ENST00000372407 PRPF4O43172 522 aaKnown RBP eCLIP11.84□□□□□ -0.51
PTPRF-203ENST00000372407 ALBP02768 609 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 CHRM3P20309 590 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 TCF7P36402 384 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-203ENST00000372407 CLK1P49759 484 aaKnown RBP11.84□□□□□ -0.51
PTPRF-203ENST00000372407 NFIAQ12857 509 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 SEZ6Q53EL9 994 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 NT5DC1Q5TFE4 455 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 MICU2Q8IYU8 434 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 ACTL9Q8TC94 416 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 PAFAH2Q99487 392 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 SOX13Q9UN79 622 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 FAM95CA0A1B0GW59 222 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 SOAT2O75908 522 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms