RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 OR6B3Q8NGW1 331 aa13.87□□□□□ -0.19
SQSTM1-201ENST00000360718 VCPIP1Q96JH7 1222 aa13.87□□□□□ -0.19
SQSTM1-201ENST00000360718 ERP44Q9BS26 406 aa13.87□□□□□ -0.19
SQSTM1-201ENST00000360718 DPH5Q9H2P9 285 aa13.87□□□□□ -0.19
SQSTM1-201ENST00000360718 SNX25Q9H3E2 840 aa13.87□□□□□ -0.19
SQSTM1-201ENST00000360718 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.87□□□□□ -0.197e-6■■■□□ 17.5
SQSTM1-201ENST00000360718 INPPL1O15357 1258 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 ATMINO43313 823 aaPredicted RBP13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 PPFIA2O75334 1257 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 CLTBP09497 229 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 GATMP50440 423 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 DRG2P55039 364 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 C2CD6Q53TS8 623 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 LIMS2Q7Z4I7 341 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 CROCCP2Q86T23 111 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 HOOK3Q86VS8 718 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 MCOLN2Q8IZK6 566 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 OR2W6PQ8NHA6 318 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 URGCPQ8TCY9 931 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 DDX27Q96GQ7 796 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 LPIN3Q9BQK8 851 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 TMEM106CQ9BVX2 250 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 CNOT10Q9H9A5 744 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 PPANQ9NQ55 473 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 TMEM39AQ9NV64 488 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 ADAM22Q9P0K1 906 aa13.86□□□□□ -0.19
SQSTM1-201ENST00000360718 TRIM43BA6NCK2 446 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 H0YHG0 523 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 PODXLO00592 558 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 FSBPO95073 299 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 SEC24CP53992 1094 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 STILQ15468 1287 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 UPP1Q16831 310 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 KRT71Q3SY84 523 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 ICE2Q659A1 982 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 C11orf63Q6NUN7 778 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 CD300LGQ6UXG3 332 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 ZNF280BQ86YH2 543 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 PHF13Q86YI8 300 aaPredicted RBP13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 SUGP1Q8IWZ8 645 aaKnown RBP13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 CRIPAKQ8N1N5 446 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 TOP6BLQ8N6T0 577 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 TRIM43Q96BQ3 446 aaPredicted RBP13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 UROC1Q96N76 676 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 UVRAGQ9P2Y5 699 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 CNOT8Q9UFF9 292 aaKnown RBP13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 NOVA2Q9UNW9 492 aaKnown RBP13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 A8MXQ7 604 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 DDHD2O94830 711 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 CYP1A2P05177 515 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 EN2P19622 333 aaPredicted RBP13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 PAX3P23760 479 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 LMO2P25791 158 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 FLT3P36888 993 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 GNL1P36915 607 aaPredicted RBP13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 TUSC3Q13454 348 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 CNGA2Q16280 664 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 PAN2Q504Q3 1202 aaKnown RBP13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 DUPD1Q68J44 220 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 LLGL2Q6P1M3 1020 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 WDTC1Q8N5D0 677 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 C12orf29Q8N999 325 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 LHX5Q9H2C1 402 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 DPEP3Q9H4B8 488 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 AVENQ9NQS1 362 aaPredicted RBP13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 TMEM161AQ9NX61 479 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 SLC12A6Q9UHW9 1150 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 COG5Q9UP83 839 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 ALG6Q9Y672 507 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 ALPK3Q96L96 1907 aa13.85□□□□□ -0.19
SQSTM1-201ENST00000360718 CYB561D2O14569 222 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 ITGB1P05556 798 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 CALB1P05937 261 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 FAM163BP0C2L3 166 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 CHRNA3P32297 505 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 C1QBPQ07021 282 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 MON1BQ7L1V2 547 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 NECAB2Q7Z6G3 386 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 OSTM1Q86WC4 334 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 ADGRF2Q8IZF7 708 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 RUNDC3BQ96NL0 473 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 C11orf70Q9BRQ4 267 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 NUP85Q9BW27 656 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 KANSL3Q9P2N6 904 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 HCSTQ9UBK5 93 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 LRFN2Q9ULH4 789 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 ATP8A1Q9Y2Q0 1164 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 PCDHB7Q9Y5E2 793 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 CAPN7Q9Y6W3 813 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 I3L4J1 428 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 TRAPPC3O43617 180 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 CDH5P33151 784 aaPredicted RBP13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 CCDC142Q17RM4 750 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 RNF187Q5TA31 235 aaPredicted RBP13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 DENND1BQ6P3S1 775 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 DSTYKQ6XUX3 929 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 ACOT1Q86TX2 421 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 ERICH1Q86X53 443 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 ABI1Q8IZP0 508 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 ZNF564Q8TBZ8 553 aaPredicted RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms