RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 CEP120Q8N960 986 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 ZNF461Q8TAF7 563 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 PLD4Q96BZ4 506 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 RBM41Q96IZ5 413 aaKnown RBP9.65□□□□□ -0.86
UPF2-202ENST00000357604 UBXN6Q9BZV1 441 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 RNF39Q9H2S5 420 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 INSL5Q9Y5Q6 135 aa9.65□□□□□ -0.86
UPF2-202ENST00000357604 MCM3P25205 808 aa9.65□□□□□ -0.87
UPF2-202ENST00000357604 CHKAP35790 457 aa9.65□□□□□ -0.87
UPF2-202ENST00000357604 ARHGAP25P42331 645 aa9.65□□□□□ -0.87
UPF2-202ENST00000357604 TBX4P57082 545 aa9.65□□□□□ -0.87
UPF2-202ENST00000357604 HTRA4P83105 476 aaPredicted RBP9.65□□□□□ -0.87
UPF2-202ENST00000357604 TUBB2AQ13885 445 aa9.65□□□□□ -0.87
UPF2-202ENST00000357604 FAM109BQ6ICB4 259 aaPredicted RBP9.65□□□□□ -0.87
UPF2-202ENST00000357604 RABGGTAQ92696 567 aa9.65□□□□□ -0.87
UPF2-202ENST00000357604 TUBB2BQ9BVA1 445 aa9.65□□□□□ -0.87
UPF2-202ENST00000357604 APOL5Q9BWW9 433 aa9.65□□□□□ -0.87
UPF2-202ENST00000357604 RBSNQ9H1K0 784 aa9.65□□□□□ -0.87
UPF2-202ENST00000357604 STXBP5LQ9Y2K9 1186 aa9.65□□□□□ -0.87
UPF2-202ENST00000357604 FHOD1Q9Y613 1164 aa9.65□□□□□ -0.87
UPF2-202ENST00000357604 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.64□□□□□ -0.87
UPF2-202ENST00000357604 SOBPA7XYQ1 873 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 E7EVH7 732 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 CLASP2O75122 1294 aaKnown RBP9.64□□□□□ -0.87
UPF2-202ENST00000357604 C1RP00736 705 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 HAPLN1P10915 354 aaPredicted RBP9.64□□□□□ -0.87
UPF2-202ENST00000357604 EFEMP1Q12805 493 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 ZNF177Q13360 481 aaPredicted RBP9.64□□□□□ -0.87
UPF2-202ENST00000357604 CDH18Q13634 790 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 PTPN14Q15678 1187 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 LRIT3Q3SXY7 679 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 TTC39BQ5VTQ0 682 aaPredicted RBP9.64□□□□□ -0.87
UPF2-202ENST00000357604 SPOPLQ6IQ16 392 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 TAS1R3Q7RTX0 852 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 CCDC186Q7Z3E2 898 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 OR5B17Q8NGF7 314 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 HNRNPABQ99729 332 aaKnown RBP9.64□□□□□ -0.87
UPF2-202ENST00000357604 PRDM16Q9HAZ2 1276 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 RAB23Q9ULC3 237 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 PARP14Q460N5 1801 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 M0QZQ0 153 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 CILPO75339 1184 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 EIF4A3P38919 411 aaKnown RBP9.64□□□□□ -0.87
UPF2-202ENST00000357604 DUSP4Q13115 394 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 ZNF268Q14587 947 aaPredicted RBP9.64□□□□□ -0.87
UPF2-202ENST00000357604 PDGFRLQ15198 375 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 C9orf50Q5SZB4 431 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 ANKRD54Q6NXT1 300 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 TRIM58Q8NG06 486 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 C8orf48Q96LL4 319 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 GUCA1BQ9UMX6 200 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 H0Y626 953 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 ZMYND10O75800 440 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 MOCS2O96007 188 aaPredicted RBP9.64□□□□□ -0.87
UPF2-202ENST00000357604 GLI1P08151 1106 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 MAN1A1P33908 653 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 ITKQ08881 620 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 MEA1Q16626 185 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 ANO4Q32M45 955 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 FIGNQ5HY92 759 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 TMCO4Q5TGY1 634 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 ACAD10Q6JQN1 1059 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 CHSY1Q86X52 802 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 DUSP9Q99956 384 aaKnown RBP9.64□□□□□ -0.87
UPF2-202ENST00000357604 PFDN6O15212 129 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 SYNCRIPO60506 623 aaKnown RBP9.64□□□□□ -0.87
UPF2-202ENST00000357604 HDCP19113 662 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 SLC9A1P19634 815 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 CDKAL1Q5VV42 579 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 LRRC55Q6ZSA7 311 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 ZNF598Q86UK7 904 aaKnown RBP9.64□□□□□ -0.87
UPF2-202ENST00000357604 MON1AQ86VX9 555 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 VN1R2Q8NFZ6 395 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 SP110Q9HB58 689 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 POPDC2Q9HBU9 364 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 SLC27A5Q9Y2P5 690 aa9.64□□□□□ -0.87
UPF2-202ENST00000357604 CTAGE9A4FU28 777 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 APODP05090 189 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 HMBSP08397 361 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 RARGP13631 454 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 FGFR3P22607 806 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 ADSSP30520 456 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 SARNPP82979 210 aaKnown RBP9.63□□□□□ -0.87
UPF2-202ENST00000357604 ZNF280BQ86YH2 543 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 WNT8BQ93098 351 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 SPATA17Q96L03 361 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 MUC3BQ9H195 1237 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 DDHD2O94830 711 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 IGHA2P01877 340 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 SPATA31D3P0C874 917 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 ADKP55263 362 aaKnown RBP9.63□□□□□ -0.87
UPF2-202ENST00000357604 TPI1P60174 286 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 DLG4P78352 724 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 LMNB2Q03252 620 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 SMAD4Q13485 552 aaKnown RBP9.63□□□□□ -0.87
UPF2-202ENST00000357604 RPS6KA1Q15418 735 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 CDO1Q16878 200 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 ALKBH5Q6P6C2 394 aaKnown RBP9.63□□□□□ -0.87
UPF2-202ENST00000357604 SPATA31D4Q6ZUB0 917 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 METTL3Q86U44 580 aaKnown RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms