RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 IPMKQ8NFU5 416 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 ACTL9Q8TC94 416 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 ZNF75CPQ92670 426 aaPredicted RBP20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 ZNF560Q96MR9 790 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 ECSITQ9BQ95 431 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 ACAD9Q9H845 621 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 ZNF212Q9UDV6 495 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 MCM8Q9UJA3 840 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 SLIT1O75093 1534 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 ZNF839A8K0R7 811 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 CENPTQ96BT3 561 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 SAR1AQ9NR31 198 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 MST1RQ04912 1400 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 DIS3LQ8TF46 1054 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 C17orf80Q9BSJ5 609 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 ZNF556Q9HAH1 456 aa20.24■□□□□ 0.83
CCDC88B-202ENST00000356786 SUPT7LO94864 414 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 BMP6P22004 513 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 ADARP55265 1226 aaKnown RBP20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 MCL1Q07820 350 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 ITPK1Q13572 414 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 FAM83EQ2M2I3 478 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 THEMIS2Q5TEJ8 643 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 SLC47A2Q86VL8 602 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 CALML6Q8TD86 181 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 NT5C1AQ9BXI3 368 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 UNC5CO95185 931 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 TNFAIP8O95379 198 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 PDGFRBP09619 1106 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 PTPN7P35236 360 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 FBXL16Q8N461 479 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 OTULINQ96BN8 352 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 ZCWPW1Q9H0M4 648 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 ADGRA2Q96PE1 1338 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 DDX3XO00571 662 aaKnown RBP eCLIP20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 RGS5O15539 181 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 PCSK7Q16549 785 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 ATPAF2Q8N5M1 289 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 ASIC4Q96FT7 647 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 MED15Q96RN5 788 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 PCDHGC5Q9Y5F6 944 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 IGSF9BQ9UPX0 1349 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 TULP2O00295 520 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 ZNF197O14709 1029 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 CPA3P15088 417 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 GSTT1P30711 240 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 GTF2H3Q13889 308 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 MTFR1Q15390 333 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 CIAPIN1Q6FI81 312 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 KYQ8NBH2 561 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 GLMNQ92990 594 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 USP13Q92995 863 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 TUBGCP3Q96CW5 907 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 FRMD8P1Q9BZ68 369 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 TBX20Q9UMR3 447 aa20.23■□□□□ 0.83
CCDC88B-202ENST00000356786 SUPT3HB4E1H0 165 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 ZNF263O14978 683 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 NDUFS3O75489 264 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 SSTR1P30872 391 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 GLRBP48167 497 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 EMC2Q15006 297 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 SPATA33Q96N06 139 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 SHOC2Q9UQ13 582 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 PSMG1O95456 288 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 BAATQ14032 418 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 FUT11Q495W5 492 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 SPOCD1Q6ZMY3 1216 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 SREK1IP1Q8N9Q2 155 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 PABPC5Q96DU9 382 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 SYBUQ9NX95 663 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 DCCP43146 1447 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 ECE2O60344 883 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 ADRA1DP25100 572 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 PEX5P50542 639 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 MREGQ8N565 214 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 MXRA8Q9BRK3 442 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 RIC8BQ9NVN3 520 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 C1orf232A0A0U1RR37 186 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 LINC00854A0A1B0GVQ3 168 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 PECAM1P16284 738 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 PTDSS1P48651 473 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 LRRC74AQ0VAA2 488 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 LAMC2Q13753 1193 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 CNGA2Q16280 664 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 NAPEPLDQ6IQ20 393 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 ISLR2Q6UXK2 745 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 CKAP2Q8WWK9 683 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 THUMPD3Q9BV44 507 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 DCLK3Q9C098 648 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 LRFN2Q9ULH4 789 aa20.22■□□□□ 0.83
CCDC88B-202ENST00000356786 MYOM1P52179 1685 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 SDR42E2A6NKP2 422 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 RAG1P15918 1043 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 ROR2Q01974 943 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 CACNB2Q08289 660 aaPredicted RBP20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 SF3B3Q15393 1217 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 LINC00116Q8NCU8 138 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 AFG1LQ8WV93 481 aa20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 RMND5BQ96G75 393 aaPredicted RBP20.21■□□□□ 0.83
CCDC88B-202ENST00000356786 WRNIP1Q96S55 665 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms