RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PCOLCE2Q9UKZ9 415 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 ODF2LQ9ULJ1 636 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 MYO6Q9UM54 1294 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 PCDHA12Q9UN75 941 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 PPP2R3BQ9Y5P8 575 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 MROH7Q68CQ1 1323 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 KDM3AQ9Y4C1 1321 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 TCRBV16S1A1N1A0A5B0 115 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 EFCAB8A8MWE9 144 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 N4BP1O75113 896 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 SEC31AO94979 1220 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 CYP1A1P04798 512 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 UCHL3P15374 230 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 CYP3A5P20815 502 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 KLRC1P26715 233 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 GCAP28676 217 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 ARSEP51690 589 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 VSNL1P62760 191 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 FMO1Q01740 532 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 CNTN2Q02246 1040 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 PRPF4BQ13523 1007 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 USH1GQ495M9 461 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 RTP2Q5QGT7 225 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 CIAPIN1Q6FI81 312 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 NCAPH2Q6IBW4 605 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 RHBDF2Q6PJF5 856 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 CD300LGQ6UXG3 332 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 NSMFQ6X4W1 530 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 MOB2Q70IA6 237 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 NT5DC3Q86UY8 548 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 WFDC3Q8IUB2 231 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 MMGT1Q8N4V1 131 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 TMEM52Q8NDY8 209 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 NOC3LQ8WTT2 800 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 JDP2Q8WYK2 163 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 VOPP1Q96AW1 172 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 SLF1Q9BQI6 1058 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 PYM1Q9BRP8 204 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 CBWD1Q9BRT8 395 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 PARD6BQ9BYG5 372 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 ZNF341Q9BYN7 854 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 NAT10Q9H0A0 1025 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 TAOK3Q9H2K8 898 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 RPAP3Q9H6T3 665 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 PIDD1Q9HB75 910 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 CYP4F12Q9HCS2 524 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 SSU72Q9NP77 194 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 AP5S1Q9NUS5 200 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 TYW1Q9NV66 732 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 FLRT1Q9NZU1 646 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 ADGRE2Q9UHX3 823 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 NEU3Q9UQ49 428 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 EPN1Q9Y6I3 576 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 ZFHX3Q15911 3703 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 A0A0A6YYK5 440 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 CCDC194A0A1B0GVG4 234 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 ADM5C9JUS6 153 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 O00370 1275 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 IPO5O00410 1097 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 TRAF5O00463 557 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 HIP1RO75146 1068 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 FOSP01100 380 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 PFKMP08237 780 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 ITIH2P19823 946 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 SFPQP23246 707 aaKnown RBP eCLIP2.51□□□□□ -2.01
VPS54-202ENST00000354504 IGFBP6P24592 240 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 MAP4P27816 1152 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 CDH5P33151 784 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 FLT3P36888 993 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 CSRP3P50461 194 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 GPC3P51654 580 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 VAV2P52735 878 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 UBXN2AP68543 259 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 SETQ01105 290 aaPredicted RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 TRIM29Q14134 588 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 SLC18A3Q16572 532 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 CYP1B1Q16678 543 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 PRR16Q569H4 304 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 ANGEL2Q5VTE6 544 aaKnown RBP2.51□□□□□ -2.01
VPS54-202ENST00000354504 ZDHHC24Q6UX98 284 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 FAM160B2Q86V87 743 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 RIOX2Q8IUF8 465 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 KIAA0319LQ8IZA0 1049 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 TP53INP1Q96A56 240 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 SYT3Q9BQG1 590 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 C16orf70Q9BSU1 422 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 TMEM117Q9H0C3 514 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 PDCL3Q9H2J4 239 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 BHMT2Q9H2M3 363 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 NKX2-4Q9H2Z4 354 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 MINDY3Q9H8M7 445 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 ZNF287Q9HBT7 754 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 ACP6Q9NPH0 428 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 MYO1AQ9UBC5 1043 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 SNX12Q9UMY4 172 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 LRP4O75096 1905 aa2.51□□□□□ -2.01
VPS54-202ENST00000354504 ZSCAN5CA6NGD5 496 aaPredicted RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 GABRDO14764 452 aa2.5□□□□□ -2.01
VPS54-202ENST00000354504 RRP9O43818 475 aaKnown RBP2.5□□□□□ -2.01
VPS54-202ENST00000354504 FKTNO75072 461 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms