RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ZYXQ15942 572 aaKnown RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 DBN1Q16643 649 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 MYLK3Q32MK0 819 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 BBS9Q3SYG4 887 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 KLC3Q6P597 504 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 PAOXQ6QHF9 649 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 SPOCD1Q6ZMY3 1216 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 C15orf52Q6ZUT6 534 aaKnown RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 SIAH1Q8IUQ4 282 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 TRIM42Q8IWZ5 723 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 FBXL13Q8NEE6 735 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 ZFP28Q8NHY6 868 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 SNRNP27Q8WVK2 155 aaKnown RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 LZICQ8WZA0 190 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 NKD2Q969F2 451 aaPredicted RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 ABTB1Q969K4 478 aaPredicted RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 CLMNQ96JQ2 1002 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 CATSPER2Q96P56 530 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 GCNAQ96QF7 691 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 PHF12Q96QT6 1004 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 SETDB2Q96T68 719 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 NYXQ9GZU5 481 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 TMEM8AQ9HCN3 771 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 NDUFA13Q9P0J0 144 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 SAE1Q9UBE0 346 aaPredicted RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 SOX13Q9UN79 622 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 IVNS1ABPQ9Y6Y0 642 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 hCG_1818297A0A087WSY0 165 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 A0A0B4J269 797 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 MYOCOSA0A1B0GUC4 107 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 TCRBV9S1A1TA0A576 114 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 CAPN8A6NHC0 703 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 ARHGAP42A6NI28 874 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 PITPNM1O00562 1244 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 CASQ2O14958 399 aaPredicted RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 TLR3O15455 904 aaKnown RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 SLC5A2P31639 672 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 RPL5P46777 297 aaKnown RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 EPHB1P54762 984 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 ADARP55265 1226 aaKnown RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 RPL7AP62424 266 aaKnown RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 MRPS5P82675 430 aaKnown RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 XIAPP98170 497 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 TUBB3Q13509 450 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 GK3PQ14409 553 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 KBTBD12Q3ZCT8 623 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 PLEKHA7Q6IQ23 1121 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 PGM2L1Q6PCE3 622 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 C1orf228Q6PIY5 440 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 B3GNT9Q6UX72 402 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 SV2AQ7L0J3 742 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 HAUS6Q7Z4H7 955 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 PPIL6Q8IXY8 311 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 RCOR2Q8IZ40 523 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 EFCAB3Q8N7B9 438 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 POU5F2Q8N7G0 328 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 SLC35B2Q8TB61 432 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 DCAF4Q8WV16 495 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 SLC44A1Q8WWI5 657 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 IRGQQ8WZA9 623 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 CCDC124Q96CT7 223 aaKnown RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 TRIM11Q96F44 468 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 SH2D3AQ9BRG2 576 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 SENP6Q9GZR1 1112 aaPredicted RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 WWP1Q9H0M0 922 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 ZNRF3Q9ULT6 936 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 HBS1LQ9Y450 684 aaKnown RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 SF3B1O75533 1304 aaKnown RBP eCLIP7.09□□□□□ -1.281e-7■■■■■ 51.7
VPS39-202ENST00000348544 SDR42E2A6NKP2 422 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 SLC16A4O15374 487 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 KCNQ2O43526 872 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 UFL1O94874 794 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 CLPTM1O96005 669 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 C1QAP02745 245 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 SERPINA6P08185 405 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 CD48P09326 243 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 ARP10275 920 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 RAG1P15918 1043 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 AOC1P19801 751 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 FDFT1P37268 417 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 NRLP54845 237 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 PSMC5P62195 406 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 NOMO3P69849 1222 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 TMPRSS15P98073 1019 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 GTF2BQ00403 316 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 PLCB3Q01970 1234 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 BTKQ06187 659 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 GRAPQ13588 217 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 CHI3L2Q15782 390 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 SH3D19Q5HYK7 790 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 FAM182AQ5T1J6 154 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 ZFPM1Q8IX07 1006 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 PALM2Q8IXS6 379 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 MARVELD2Q8N4S9 558 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 HIPK4Q8NE63 616 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 GRAPLQ8TC17 118 aaPredicted RBP7.08□□□□□ -1.28
VPS39-202ENST00000348544 DIS3LQ8TF46 1054 aaKnown RBP7.08□□□□□ -1.28
VPS39-202ENST00000348544 JDP2Q8WYK2 163 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 GRIP2Q9C0E4 1043 aa7.08□□□□□ -1.28
VPS39-202ENST00000348544 GPRC5CQ9NQ84 441 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms