RNA–Protein interactions for RNA: ENST00000346436.10

CLCN6-202, Transcript of chloride voltage-gated channel 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN6, Length 5,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-202ENST00000346436 ACP6Q9NPH0 428 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 PARVAQ9NVD7 372 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 USP20Q9Y2K6 914 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 IQANK1A0A1B0GTG1 560 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 FANCGO15287 622 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 HMGB3O15347 200 aaKnown RBP11.33□□□□□ -0.6
CLCN6-202ENST00000346436 ERVK-10P10266 1014 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 SHROOM1Q2M3G4 852 aaPredicted RBP11.33□□□□□ -0.6
CLCN6-202ENST00000346436 MDH1BQ5I0G3 518 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 KIRREL3Q8IZU9 778 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 ACTRT1Q8TDG2 376 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 ARHGEF26Q96DR7 871 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 CGRRF1Q99675 332 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 ZSWIM1Q9BR11 485 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 TRPM8Q7Z2W7 1104 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 CTU1Q7Z7A3 348 aaKnown RBP11.33□□□□□ -0.6
CLCN6-202ENST00000346436 UNC45BQ8IWX7 931 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 PABPC5Q96DU9 382 aaKnown RBP11.33□□□□□ -0.6
CLCN6-202ENST00000346436 SPATA17Q96L03 361 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 POLR3CQ9BUI4 534 aaPredicted RBP11.33□□□□□ -0.6
CLCN6-202ENST00000346436 SLC13A1Q9BZW2 595 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 PKP3Q9Y446 797 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 SLIT3O75094 1523 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 ANP32DO95626 131 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 HOXA10P31260 410 aaPredicted RBP11.33□□□□□ -0.6
CLCN6-202ENST00000346436 ARL4CP56559 192 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 ZNF844Q08AG5 666 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 SMTNL2Q2TAL5 461 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 PHLDB3Q6NSJ2 640 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 ZNF410Q86VK4 478 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 PPM1NQ8N819 430 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 SPIRE2Q8WWL2 714 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 KRT35Q92764 455 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 TAS2R14Q9NYV8 317 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 AIPL1Q9NZN9 384 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 VPS9D1Q9Y2B5 631 aa11.33□□□□□ -0.6
CLCN6-202ENST00000346436 KANSL1LA0AUZ9 987 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 MTSS1O43312 755 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 KRT37O76014 449 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 TMPRSS15P98073 1019 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 ERAP2Q6P179 960 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 SLC13A5Q86YT5 568 aaPredicted RBP11.32□□□□□ -0.6
CLCN6-202ENST00000346436 MORC4Q8TE76 937 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.32□□□□□ -0.6
CLCN6-202ENST00000346436 AKT1S1Q96B36 256 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 HPDLQ96IR7 371 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 MCEEQ96PE7 176 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 TRAIPQ9BWF2 469 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 TRABDQ9H4I3 376 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 GDF3Q9NR23 364 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 TLR8Q9NR97 1041 aaKnown RBP11.32□□□□□ -0.6
CLCN6-202ENST00000346436 PPARGC1AQ9UBK2 798 aaKnown RBP11.32□□□□□ -0.6
CLCN6-202ENST00000346436 MRPS23Q9Y3D9 190 aaKnown RBP11.32□□□□□ -0.6
CLCN6-202ENST00000346436 CCT8L1PA6NM43 557 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 APOL1O14791 398 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 MGEA5O60502 916 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 PCDH8O95206 1070 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 VIL1P09327 827 aaKnown RBP11.32□□□□□ -0.6
CLCN6-202ENST00000346436 NPY5RQ15761 445 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 ATAT1Q5SQI0 421 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 MFSD4BQ5TF39 518 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 SLC35C1Q96A29 364 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 PABPC3Q9H361 631 aaKnown RBP11.32□□□□□ -0.6
CLCN6-202ENST00000346436 DPP3Q9NY33 737 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 CPSF2Q9P2I0 782 aaKnown RBP11.32□□□□□ -0.6
CLCN6-202ENST00000346436 SALL4Q9UJQ4 1053 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 FIS1Q9Y3D6 152 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 USP15Q9Y4E8 981 aaPredicted RBP11.32□□□□□ -0.6
CLCN6-202ENST00000346436 MRC1P22897 1456 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 DIAPH2O60879 1101 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 SKP1P63208 163 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 APTXQ7Z2E3 356 aaKnown RBP11.32□□□□□ -0.6
CLCN6-202ENST00000346436 CARD9Q9H257 536 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 FBXO44Q9H4M3 255 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 A0A087WZ62 844 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 EXTL3O43909 919 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 H2AFYO75367 372 aaKnown RBP11.32□□□□□ -0.6
CLCN6-202ENST00000346436 KIZQ2M2Z5 673 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 CBWD6Q4V339 395 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 CBWD3Q5JTY5 395 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 CBWD5Q5RIA9 395 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 PSRC1Q6PGN9 363 aaPredicted RBP11.32□□□□□ -0.6
CLCN6-202ENST00000346436 ARHGEF19Q8IW93 802 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 SUSD6Q92537 303 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 DNAJC19Q96DA6 116 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 NEUROG2Q9H2A3 272 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 DDX20Q9UHI6 824 aaKnown RBP11.32□□□□□ -0.6
CLCN6-202ENST00000346436 RGPD2P0DJD1 1756 aa11.32□□□□□ -0.6
CLCN6-202ENST00000346436 KPNA7A9QM74 516 aa11.31□□□□□ -0.6
CLCN6-202ENST00000346436 GYG2O15488 501 aa11.31□□□□□ -0.6
CLCN6-202ENST00000346436 DDHD2O94830 711 aa11.31□□□□□ -0.6
CLCN6-202ENST00000346436 F9P00740 461 aa11.31□□□□□ -0.6
CLCN6-202ENST00000346436 ATP5BP06576 529 aaKnown RBP11.31□□□□□ -0.6
CLCN6-202ENST00000346436 SREBF1P36956 1147 aa11.31□□□□□ -0.6
CLCN6-202ENST00000346436 HADHAP40939 763 aa11.31□□□□□ -0.6
CLCN6-202ENST00000346436 IFI35P80217 286 aaPredicted RBP11.31□□□□□ -0.6
CLCN6-202ENST00000346436 HIST2H2ACQ16777 129 aaPredicted RBP11.31□□□□□ -0.6
CLCN6-202ENST00000346436 HIST2H2AA3Q6FI13 130 aa11.31□□□□□ -0.6
CLCN6-202ENST00000346436 GBP7Q8N8V2 638 aaPredicted RBP11.31□□□□□ -0.6
CLCN6-202ENST00000346436 SHISA4Q96DD7 197 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms