RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 LBHD1Q9BQE6 289 aaPredicted RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 MYL10Q9BUA6 226 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 SLITRK2Q9H156 845 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 TMCC3Q9ULS5 477 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 CCDC61Q9Y6R9 512 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 E9PBE3 544 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 CD3EAPO15446 510 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 RAG1P15918 1043 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 SKIV2L2P42285 1042 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 LRRC69Q6ZNQ3 347 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 TTC6Q86TZ1 520 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 ERO1BQ86YB8 467 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 INO80EQ8NBZ0 244 aaPredicted RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 AKAP1Q92667 903 aaKnown RBP eCLIP6.37□□□□□ -1.39
VCAN-203ENST00000343200 SGF29Q96ES7 293 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 IFT43Q96FT9 208 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 ASNSD1Q9NWL6 643 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 CYP39A1Q9NYL5 469 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 KCNIP3Q9Y2W7 256 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 PTPRGP23470 1445 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 SMNDC1O75940 238 aaKnown RBP eCLIP6.37□□□□□ -1.39
VCAN-203ENST00000343200 TOP3BO95985 862 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 DNAJC3Q13217 504 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 SWI5Q1ZZU3 235 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 ARL6IP4Q66PJ3 421 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 EPHX4Q8IUS5 362 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 KBTBD3Q8NAB2 608 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 MSANTD3Q96H12 275 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 SMAD5Q99717 465 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 DDX47Q9H0S4 455 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 GPN1Q9HCN4 374 aaPredicted RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 ALG13Q9NP73 1137 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 SLC52A1Q9NWF4 448 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 NMRK1Q9NWW6 199 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 RAPGEFL1Q9UHV5 662 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 IFI30P13284 250 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 TBXAS1P24557 533 aaPredicted RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 CCNIQ14094 377 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 TRIM65Q6PJ69 517 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 KCNK18Q7Z418 384 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 MTDHQ86UE4 582 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 DQX1Q8TE96 717 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 SH3TC2Q8TF17 1288 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 RFFLQ8WZ73 363 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 POP5Q969H6 163 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 FAM118BQ9BPY3 351 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 BTBD10Q9BSF8 475 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 ADAMTS1Q9UHI8 967 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 VPS9D1Q9Y2B5 631 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 PCNX1Q96RV3 2341 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 WWP2O00308 870 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 POLR2MP0CAP2 368 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 TKTP29401 623 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 HSD17B3P37058 310 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 MTFR1Q15390 333 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 CHI3L2Q15782 390 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 CASP12Q6UXS9 341 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 MSANTD1Q6ZTZ1 278 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 OSCP1Q8WVF1 389 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 TAMM41Q96BW9 452 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 SUCLG2Q96I99 432 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 TNIP3Q96KP6 325 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 TUBGCP5Q96RT8 1024 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 RIOK2Q9BVS4 552 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 TDRD1Q9BXT4 1180 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 RNF38Q9H0F5 515 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 SAMSN1Q9NSI8 373 aaKnown RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 WHRNQ9P202 907 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 RCOR1Q9UKL0 485 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 TMCC2O75069 709 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 ITIH2P19823 946 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 SPIDRQ14159 915 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 UBE3CQ15386 1083 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 ANKS6Q68DC2 871 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 TTC30BQ8N4P2 665 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 ATXN7L3BQ96GX2 97 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 MED11Q9P086 117 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 RGS17Q9UGC6 210 aaPredicted RBP6.37□□□□□ -1.39
VCAN-203ENST00000343200 MGAT4AQ9UM21 535 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 FANCD2Q9BXW9 1451 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 KIAA1549Q9HCM3 1950 aa6.37□□□□□ -1.39
VCAN-203ENST00000343200 LOC100653049A0A140TA62 436 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 GSAPA4D1B5 854 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 FAM20BO75063 409 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 NTRK1P04629 796 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 ILF3Q12906 894 aaKnown RBP eCLIP6.36□□□□□ -1.39
VCAN-203ENST00000343200 FAM47CQ5HY64 1035 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 RHOT1Q8IXI2 618 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 RGS18Q9NS28 235 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 SCAF8Q9UPN6 1271 aaKnown RBP6.36□□□□□ -1.39
VCAN-203ENST00000343200 PDGFRBP09619 1106 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 POU5F1Q01860 360 aaKnown RBP6.36□□□□□ -1.39
VCAN-203ENST00000343200 CDC16Q13042 620 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 ARHGEF6Q15052 776 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 PGBD2Q6P3X8 592 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 COL23A1Q86Y22 540 aaPredicted RBP6.36□□□□□ -1.39
VCAN-203ENST00000343200 ANKRD13AQ8IZ07 590 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 OR8H1Q8NGG4 311 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 EXD1Q8NHP7 514 aa6.36□□□□□ -1.39
VCAN-203ENST00000343200 PNPT1Q8TCS8 783 aaKnown RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms