RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 LIG4P49917 911 aa23.41■■□□□ 1.34
TRIM28-202ENST00000341753 KDSRQ06136 332 aa23.41■■□□□ 1.34
TRIM28-202ENST00000341753 BAATQ14032 418 aaPredicted RBP23.41■■□□□ 1.34
TRIM28-202ENST00000341753 MCF2L2Q86YR7 1114 aa23.41■■□□□ 1.34
TRIM28-202ENST00000341753 NAT8LQ8N9F0 302 aa23.41■■□□□ 1.34
TRIM28-202ENST00000341753 ZNF606Q8WXB4 792 aa23.41■■□□□ 1.34
TRIM28-202ENST00000341753 HARSP12081 509 aaKnown RBP23.4■■□□□ 1.34
TRIM28-202ENST00000341753 MMP8P22894 467 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 BRD2P25440 801 aaKnown RBP23.4■■□□□ 1.34
TRIM28-202ENST00000341753 YY1P25490 414 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 ARHGEF16Q5VV41 709 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 TRIM72Q6ZMU5 477 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 UNC45BQ8IWX7 931 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 CEP120Q8N960 986 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 SLC35B2Q8TB61 432 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 JDP2Q8WYK2 163 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 GATA6Q92908 595 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 PDCD2LQ9BRP1 358 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 TIPINQ9BVW5 301 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 GABBR1Q9UBS5 961 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 WDR64B1ANS9 1081 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 ZNF862O60290 1169 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 CST8O60676 142 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 BAG2O95816 211 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 CDHR3Q6ZTQ4 885 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 SHKBP1Q8TBC3 707 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 RSAD2Q8WXG1 361 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 VCPIP1Q96JH7 1222 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 TTC1Q99614 292 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 DEFB129Q9H1M3 183 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 TBC1D22BQ9NU19 505 aa23.4■■□□□ 1.34
TRIM28-202ENST00000341753 ANKRD33BA6NCL7 494 aa23.39■■□□□ 1.34
TRIM28-202ENST00000341753 DNAJC6O75061 913 aa23.39■■□□□ 1.34
TRIM28-202ENST00000341753 ETV4P43268 484 aa23.39■■□□□ 1.34
TRIM28-202ENST00000341753 GCLCP48506 637 aaPredicted RBP23.39■■□□□ 1.34
TRIM28-202ENST00000341753 KBTBD12Q3ZCT8 623 aa23.39■■□□□ 1.34
TRIM28-202ENST00000341753 FAM71DQ8N9W8 422 aa23.39■■□□□ 1.34
TRIM28-202ENST00000341753 OR5B17Q8NGF7 314 aa23.39■■□□□ 1.34
TRIM28-202ENST00000341753 PPCSQ9HAB8 311 aa23.39■■□□□ 1.34
TRIM28-202ENST00000341753 PXMP2Q9NR77 195 aa23.39■■□□□ 1.34
TRIM28-202ENST00000341753 PPARGC1AQ9UBK2 798 aaKnown RBP23.39■■□□□ 1.34
TRIM28-202ENST00000341753 MAGEA13PA6NCF6 341 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 CD48P09326 243 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 ELK3P41970 407 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 MCL1Q07820 350 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 ZRSR2Q15696 482 aaKnown RBP23.39■■□□□ 1.33
TRIM28-202ENST00000341753 IZUMO2Q6UXV1 221 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 RBM15BQ8NDT2 890 aaKnown RBP23.39■■□□□ 1.33
TRIM28-202ENST00000341753 TUBB6Q9BUF5 446 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 HAPLN2Q9GZV7 340 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 HACL1Q9UJ83 578 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 FER1L6Q2WGJ9 1857 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 EXTL3O43909 919 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 PEX10O60683 326 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 AVILO75366 819 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 MICALL2Q8IY33 904 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 GBP5Q96PP8 586 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 ANKEF1Q9NU02 776 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 IKBKGQ9Y6K9 419 aa23.39■■□□□ 1.33
TRIM28-202ENST00000341753 GARTP22102 1010 aa23.38■■□□□ 1.33
TRIM28-202ENST00000341753 YWHAGP61981 247 aaKnown RBP eCLIP23.38■■□□□ 1.33
TRIM28-202ENST00000341753 CFAP61Q8NHU2 1237 aa23.38■■□□□ 1.33
TRIM28-202ENST00000341753 LPAR1Q92633 364 aa23.38■■□□□ 1.33
TRIM28-202ENST00000341753 PSMD6Q15008 389 aa23.38■■□□□ 1.33
TRIM28-202ENST00000341753 HSF5Q4G112 596 aaPredicted RBP23.38■■□□□ 1.33
TRIM28-202ENST00000341753 RIPOR1Q6ZS17 1223 aa23.38■■□□□ 1.33
TRIM28-202ENST00000341753 APLFQ8IW19 511 aaPredicted RBP23.38■■□□□ 1.33
TRIM28-202ENST00000341753 SAMD3Q8N6K7 520 aa23.38■■□□□ 1.33
TRIM28-202ENST00000341753 APOPT1Q96IL0 206 aa23.38■■□□□ 1.33
TRIM28-202ENST00000341753 THTPAQ9BU02 230 aa23.38■■□□□ 1.33
TRIM28-202ENST00000341753 RNF146Q9NTX7 359 aa23.38■■□□□ 1.33
TRIM28-202ENST00000341753 PIM2Q9P1W9 311 aa23.38■■□□□ 1.33
TRIM28-202ENST00000341753 ZNF212Q9UDV6 495 aa23.38■■□□□ 1.33
TRIM28-202ENST00000341753 TCRBV9S1A1TA0A576 114 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 KBTBD13C9JR72 458 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 VWA5AO00534 786 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 RTN3O95197 1032 aaPredicted RBP23.37■■□□□ 1.33
TRIM28-202ENST00000341753 DHRS4L1P0CG22 281 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 RPS6KA3P51812 740 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 KRT72Q14CN4 511 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 MTHFD1LQ6UB35 978 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 PDIK1LQ8N165 341 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 ALKBH8Q96BT7 664 aaKnown RBP23.37■■□□□ 1.33
TRIM28-202ENST00000341753 XPNPEP1Q9NQW7 623 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 PCMTD2Q9NV79 361 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 RBAKQ9NYW8 714 aaPredicted RBP23.37■■□□□ 1.33
TRIM28-202ENST00000341753 TJP2Q9UDY2 1190 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 AGO2Q9UKV8 859 aaKnown RBP23.37■■□□□ 1.33
TRIM28-202ENST00000341753 KAT6AQ92794 2004 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 MYH9P35579 1960 aaKnown RBP23.37■■□□□ 1.33
TRIM28-202ENST00000341753 NFKBIEO00221 500 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 IL1R2P27930 398 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 GMPSP49915 693 aaPredicted RBP23.37■■□□□ 1.33
TRIM28-202ENST00000341753 CES4AQ5XG92 561 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 ARID3BQ8IVW6 561 aaPredicted RBP23.37■■□□□ 1.33
TRIM28-202ENST00000341753 CCDC110Q8TBZ0 833 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 PANX3Q96QZ0 392 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 TUBGCP5Q96RT8 1024 aa23.37■■□□□ 1.33
TRIM28-202ENST00000341753 NTPCRQ9BSD7 190 aaKnown RBP23.37■■□□□ 1.33
TRIM28-202ENST00000341753 POLR3FQ9H1D9 316 aaPredicted RBP23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms