RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 HASPINQ8TF76 798 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 HNRNPLLQ8WVV9 542 aaKnown RBP16.27■□□□□ 0.19
LIMS1-202ENST00000338045 CASD1Q96PB1 797 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 PPP1R12CQ9BZL4 782 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 SLITRK6Q9H5Y7 841 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 SCN5AQ14524 2016 aa16.27■□□□□ 0.19
LIMS1-202ENST00000338045 GOLGA6L10A0A0M3HER8 536 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 MYBPHLA2RUH7 354 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 CLDN5O00501 218 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 LRCH4O75427 683 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 CYP2C18P33260 490 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 SIX1Q15475 284 aaPredicted RBP16.26■□□□□ 0.19
LIMS1-202ENST00000338045 FAM171BQ6P995 826 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 CLEC20AQ6ZU45 233 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 SLC26A9Q7LBE3 791 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 ARCQ7LC44 396 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 PIGZQ86VD9 579 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 SCUBE3Q8IX30 993 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 KLHL7Q8IXQ5 586 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 ABI1Q8IZP0 508 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 KCTD13Q8WZ19 329 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 PCED1BQ96HM7 432 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 PKMYT1Q99640 499 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 STIM2Q9P246 746 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 PCDHB8Q9UN66 801 aa16.26■□□□□ 0.19
LIMS1-202ENST00000338045 DPYSL4O14531 572 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 HOXA2O43364 376 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 RAD51CO43502 376 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 ZRANB2O95218 330 aaKnown RBP eCLIP16.25■□□□□ 0.19
LIMS1-202ENST00000338045 GPD1P21695 349 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 FLT3P36888 993 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 SLC8A3P57103 927 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 SLC25A11Q02978 314 aaKnown RBP16.25■□□□□ 0.19
LIMS1-202ENST00000338045 RNASELQ05823 741 aaKnown RBP16.25■□□□□ 0.19
LIMS1-202ENST00000338045 CYP1B1Q16678 543 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 PRELID2Q8N945 189 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 CNPY3Q9BT09 278 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 DDX47Q9H0S4 455 aaKnown RBP16.25■□□□□ 0.19
LIMS1-202ENST00000338045 DNAJB4Q9UDY4 337 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 BEST1O76090 585 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 FAM200BP0CF97 657 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 PCK1P35558 622 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 SSR1P43307 286 aaKnown RBP16.25■□□□□ 0.19
LIMS1-202ENST00000338045 SLC7A5Q01650 507 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 INTS6LQ5JSJ4 861 aaKnown RBP16.25■□□□□ 0.19
LIMS1-202ENST00000338045 TXNRD3NBQ6F5E7 133 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 OVOS1Q6IE37 1185 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 FAM35AQ86V20 835 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 NPAS4Q8IUM7 802 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 RCOR2Q8IZ40 523 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 RXFP2Q8WXD0 754 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 FAM193BQ96PV7 902 aaPredicted RBP16.25■□□□□ 0.19
LIMS1-202ENST00000338045 NRDE2Q9H7Z3 1164 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 ASNSD1Q9NWL6 643 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 LRFN2Q9ULH4 789 aa16.25■□□□□ 0.19
LIMS1-202ENST00000338045 TCRBV7S2A1N4TA0A589 114 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 BHMG1C9JSJ3 638 aaPredicted RBP16.24■□□□□ 0.19
LIMS1-202ENST00000338045 GLI1P08151 1106 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 PDGFRAP16234 1089 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 TNFRSF8P28908 595 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 OR1G1P47890 313 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 MRPS25P82663 173 aaKnown RBP16.24■□□□□ 0.19
LIMS1-202ENST00000338045 TAF5Q15542 800 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 ATP13A4Q4VNC1 1196 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 TMCO3Q6UWJ1 677 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 MTERF4Q7Z6M4 381 aaKnown RBP16.24■□□□□ 0.19
LIMS1-202ENST00000338045 ADAT2Q7Z6V5 191 aaKnown RBP16.24■□□□□ 0.19
LIMS1-202ENST00000338045 VWCEQ96DN2 955 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 RBM41Q96IZ5 413 aaKnown RBP16.24■□□□□ 0.19
LIMS1-202ENST00000338045 MED10Q9BTT4 135 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 UBXN6Q9BZV1 441 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 C11orf49Q9H6J7 331 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 KRT82Q9NSB4 513 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.24■□□□□ 0.19
LIMS1-202ENST00000338045 ZNF446Q9NWS9 450 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 DDX56Q9NY93 547 aaKnown RBP16.24■□□□□ 0.19
LIMS1-202ENST00000338045 MTUS1Q9ULD2 1270 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 ATP11BQ9Y2G3 1177 aa16.24■□□□□ 0.19
LIMS1-202ENST00000338045 PHF2O75151 1096 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 ERLIN1O75477 346 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 ZMYND10O75800 440 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 RNF8O76064 485 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 CLTBP09497 229 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 RARAP10276 462 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 LBX1P52954 281 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 COPS2P61201 443 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 ADCY1Q08828 1119 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 KLF1Q13351 362 aaPredicted RBP16.23■□□□□ 0.19
LIMS1-202ENST00000338045 HADHQ16836 314 aaKnown RBP16.23■□□□□ 0.19
LIMS1-202ENST00000338045 CCDC14Q49A88 953 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 CCNI2Q6ZMN8 369 aaPredicted RBP16.23■□□□□ 0.19
LIMS1-202ENST00000338045 MAATS1Q7Z4T9 603 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 THEM5Q8N1Q8 247 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 C12orf50Q8NA57 414 aaPredicted RBP16.23■□□□□ 0.19
LIMS1-202ENST00000338045 ZMIZ2Q8NF64 920 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 OR10T2Q8NGX3 314 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 CCDC26Q8TAB7 109 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 CLEC4CQ8WTT0 213 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 MAIP1Q8WWC4 291 aa16.23■□□□□ 0.19
LIMS1-202ENST00000338045 HERPUD2Q9BSE4 406 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms