RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 GNG14A0A1W2PPG7 69 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 CSDE1O75534 798 aaKnown RBP13.07□□□□□ -0.32
SDC3-201ENST00000336798 ZNF682O95780 498 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 ALBP02768 609 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 MYL4P12829 197 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 FXR1P51114 621 aaKnown RBP eCLIP13.07□□□□□ -0.32
SDC3-201ENST00000336798 KRT77Q7Z794 578 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 HEATR4Q86WZ0 1026 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 COMMD2Q86X83 199 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 GFM2Q969S9 779 aaKnown RBP13.07□□□□□ -0.32
SDC3-201ENST00000336798 MTMR12Q9C0I1 747 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 TBC1D23Q9NUY8 699 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 BLOC1S6Q9UL45 172 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 GRID1Q9ULK0 1009 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 TRIM49D1C9J1S8 452 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 KLHL2O95198 593 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 TMEM132BQ14DG7 1078 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 NAPEPLDQ6IQ20 393 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 PRUNE1Q86TP1 453 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 UXS1Q8NBZ7 420 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 CERKQ8TCT0 537 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 ATG4AQ8WYN0 398 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 ELMO3Q96BJ8 720 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 GLT1D1Q96MS3 346 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 SOX13Q9UN79 622 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 LRRIQ3A6PVS8 624 aaPredicted RBP13.07□□□□□ -0.32
SDC3-201ENST00000336798 E9PBE3 544 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 STAU1O95793 577 aaKnown RBP13.07□□□□□ -0.32
SDC3-201ENST00000336798 TNNI3P19429 210 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 FCGRTP55899 365 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 NT5DC3Q86UY8 548 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 KIRREL3Q8IZU9 778 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 LPAR1Q92633 364 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 RBBP8Q99708 897 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 TIPINQ9BVW5 301 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 CDH16O75309 829 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 PPP1R37O75864 691 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 SRGNP10124 158 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 PDHBP11177 359 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 CETPP11597 493 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 ZNF23P17027 643 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 TTC33Q6PID6 262 aaPredicted RBP13.07□□□□□ -0.32
SDC3-201ENST00000336798 LUZP2Q86TE4 346 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 ROGDIQ9GZN7 287 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 NIF3L1Q9GZT8 377 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 PPIEQ9UNP9 301 aaKnown RBP13.07□□□□□ -0.32
SDC3-201ENST00000336798 WDR19Q8NEZ3 1342 aa13.07□□□□□ -0.32
SDC3-201ENST00000336798 CASTOR2A6NHX0 329 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 TSPAN3O60637 253 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 SGPL1O95470 568 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 HSMCR30P0CW71 290 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 CLCN3P51790 818 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 DNAJC3Q13217 504 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 LAMC2Q13753 1193 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 ALX1Q15699 326 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 FAM83EQ2M2I3 478 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 CACHD1Q5VU97 1274 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 COLEC11Q9BWP8 271 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 VCPKMTQ9H867 229 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 PLEKHG2Q9H7P9 1386 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 CLASP1Q7Z460 1538 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 KIAA0391O15091 583 aaKnown RBP13.06□□□□□ -0.32
SDC3-201ENST00000336798 VPS26AO75436 327 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 MT-CO1P00395 513 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 DEFB129Q9H1M3 183 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 A0A1B0GW55 424 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 A8MX80 341 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 HBP1O60381 514 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 KRT16P08779 473 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 DUX4L2P0CJ85 424 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 DUX4L3P0CJ86 424 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 DUX4L4P0CJ87 422 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 DUX4L5P0CJ88 424 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 DUX4L6P0CJ89 424 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 DUX4L7P0CJ90 424 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 ATP6V1C1P21283 382 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 FLT3P36888 993 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 YWHAZP63104 245 aaKnown RBP13.06□□□□□ -0.32
SDC3-201ENST00000336798 NAB2Q15742 525 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 UGT3A1Q6NUS8 523 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 BARGINQ6ZT62 677 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 ARID3BQ8IVW6 561 aaPredicted RBP13.06□□□□□ -0.32
SDC3-201ENST00000336798 NACC2Q96BF6 587 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 SPACA7Q96KW9 195 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 POP1Q99575 1024 aaKnown RBP13.06□□□□□ -0.32
SDC3-201ENST00000336798 C7orf25Q9BPX7 421 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 ISCA1Q9BUE6 129 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 THAP2Q9H0W7 228 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 DUX4Q9UBX2 424 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 VPS28Q9UK41 221 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 TDRKHQ9Y2W6 561 aaKnown RBP13.06□□□□□ -0.32
SDC3-201ENST00000336798 ALG6Q9Y672 507 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 SPACA6W5XKT8 324 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 CBX4O00257 560 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 NFICP08651 508 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 CSNK2BP67870 215 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 PRR5LQ6MZQ0 368 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 FBXO16Q8IX29 292 aaPredicted RBP13.06□□□□□ -0.32
SDC3-201ENST00000336798 ADSSL1Q8N142 457 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 TNIP2Q8NFZ5 429 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms